PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0314.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 323aa    MW: 36400.5 Da    PI: 5.1844
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0314.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-172166148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+ +++E++l++++++ lG++ W++Ia+ ++ gRt++++k++w++yl
  Kaladp0045s0314.2.p 21 RGNISPQEEDLIIKLHATLGNR-WSLIASQLP-GRTDNDIKNHWNSYL 66
                         7899******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344115IPR017877Myb-like domain
SuperFamilySSF466895.43E-20272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-9228IPR009057Homeodomain-like
PROSITE profilePS5129425.7171670IPR017930Myb domain
SMARTSM007171.3E-162068IPR001005SANT/Myb domain
PfamPF002494.4E-162166IPR001005SANT/Myb domain
CDDcd001671.53E-112566No hitNo description
Gene3DG3DSA:1.10.10.602.2E-212966IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRCGKSCRLR WVNYLRTDLK RGNISPQEED LIIKLHATLG NRWSLIASQL PGRTDNDIKN  60
HWNSYLSRSI NVWRRPAASD TLPQHILDNL AKLSAKLNNN PSTKKKSNER NVAAIKETGD  120
KQIPVNPHDN NDKLQTTPDV HKQDLLPTRN SWSQKCFESI LFLLEDQQDN AEEMEMGPLE  180
NYIDELVSLS DDMVANTATP QTIFSNEILL SPTAIHLEFM NNEDLRSTTS QAEMGSSCRL  240
STQQQQPSLS PSPSPSSLSL SSHFTIDQPL CISGADLNWE DYLVDNPDHH DLMNHELGSF  300
HNNISWLWDD PFHGHDAGSL GL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-1827140109B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-36myb domain protein 12