PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0272.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 387aa    MW: 42968.1 Da    PI: 5.2413
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0272.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box254e-082064341
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          r+C+ ++e  + l+C+ ++  lC  C  e H+       Ht+++
  Kaladp0045s0272.2.p 20 RRVCDFCSESTAVLYCRADSAKLCLACDREVHSTnplftkHTRTQ 64
                         689******99*********************7689999998765 PP
2zf-B_box25.62.6e-086497438
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38
                         + C+ ++e ++++ C +++  lC++C   +H +H+
  Kaladp0045s0272.2.p 64 QLCDACDESPVTILCSTDDLVLCQNCDWDTH-SHK 97
                         78****************************9.776 PP
3CCT62.11.8e-21341384144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R+ al+RYkeK+++R+++K+irYesRK++AesR R+KGrF+k++
  Kaladp0045s0272.2.p 341 RDTALSRYKEKKRNRRYDKHIRYESRKVRAESRTRIKGRFAKST 384
                          899***************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6511865IPR000315B-box-type zinc finger
SMARTSM003363.0E-131865IPR000315B-box-type zinc finger
PfamPF006439.5E-72063IPR000315B-box-type zinc finger
CDDcd000217.90E-82165No hitNo description
PROSITE profilePS501199.21461108IPR000315B-box-type zinc finger
PfamPF006435.1E-66497IPR000315B-box-type zinc finger
CDDcd000214.87E-665108No hitNo description
SMARTSM003360.2266108IPR000315B-box-type zinc finger
PROSITE profilePS5101714.753341383IPR010402CCT domain
PfamPF062031.8E-15341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGDLVAQTGV GDDGDQMLKR RVCDFCSEST AVLYCRADSA KLCLACDREV HSTNPLFTKH  60
TRTQLCDACD ESPVTILCST DDLVLCQNCD WDTHSHKSEM SVHDRKFLEG FSGCPKVCEL  120
MLVLGLEGLG KKALLGSGEE SEREGFDQSG GYGFSDFLVW DTPTVFNLDD LIGGVDSSCG  180
FGDAEAQALP SPKVTKATSG KHKEEIIRQL REMAKSEPGF SYDCEDVDPL DGINGAERVL  240
QPRDVHVEHD EKPSIRDAYE ENGLRWLSES NKHSVQVFIP KLSKTATEDG LGLVPEKPSD  300
AGVCPSQGTD GHAEVFSVPI KTDILPYVPK VYTHEFNSQE RDTALSRYKE KKRNRRYDKH  360
IRYESRKVRA ESRTRIKGRF AKSTDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268490.11e-115PREDICTED: zinc finger protein CONSTANS-LIKE 13
RefseqXP_027160532.11e-115zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A438KI971e-114A0A438KI97_VITVI; Zinc finger protein CONSTANS-like 13
STRINGVIT_07s0104g01360.t011e-115(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.13e-76B-box type zinc finger protein with CCT domain