PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0220.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 301aa    MW: 33830.9 Da    PI: 7.1381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.3e-112267346
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         +WT+eE + + +a + + ++   +W++Ia++++ g+t  ++++ ++ 
  Kaladp0045s0220.1.p 22 KWTKEENKEFERALAIHDKNttdRWDKIAAMIP-GKTVTDVINQYRE 67
                         8********************************.**********986 PP
2Myb_DNA-binding41.72.6e-13124168347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+ E+++++ +  ++G+g+W+ I+r +  ++t+ q+ s+ qky
  Kaladp0045s0220.1.p 124 PWTEAEHKRFLMGLVKHGKGDWRNISRNFVRTKTPTQVASHAQKY 168
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.2441871IPR017884SANT domain
SMARTSM007176.2E-111971IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-122176IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-52268IPR009057Homeodomain-like
CDDcd001671.35E-102268No hitNo description
PfamPF002492.1E-92267IPR001005SANT/Myb domain
PROSITE profilePS5129416.83117173IPR017930Myb domain
SuperFamilySSF466894.45E-16119173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-15120171IPR006447Myb domain, plants
SMARTSM007172.2E-10121171IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9121167IPR009057Homeodomain-like
CDDcd001671.38E-8124169No hitNo description
PfamPF002498.6E-11124168IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEALYPMSHM VNPDWFLADP PKWTKEENKE FERALAIHDK NTTDRWDKIA AMIPGKTVTD  60
VINQYRELED DVSDIEAGLV PIPGYHGSSF TLDLMDDSLR FNGERKRHTP AAAAAEHEKK  120
KGVPWTEAEH KRFLMGLVKH GKGDWRNISR NFVRTKTPTQ VASHAQKYFI RLNSGVKDKR  180
RPSIHDITTG SLADSATASG MDKAQSAAAL PREEKNMTHN ARAPTNVEDG TVWNKQDMND  240
KTESSFLMSD LGQRDLFTTL PSTCETDSLH VQGQNVYNVA YGGQYNPLFQ IQSSRQRIVG  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A9e-14231011187RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435669.11e-96transcription factor DIVARICATA
RefseqXP_006486372.11e-96transcription factor DIVARICATA-like
TrEMBLA0A067G0732e-95A0A067G073_CITSI; Uncharacterized protein
TrEMBLA0A2H5NJL42e-95A0A2H5NJL4_CITUN; Uncharacterized protein
TrEMBLV4V9N22e-95V4V9N2_9ROSI; Uncharacterized protein
STRINGXP_006486372.14e-96(Citrus sinensis)
STRINGXP_006435669.14e-96(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.19e-83MYB family protein