 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Kaladp0045s0039.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 233aa MW: 26349.6 Da PI: 6.1711 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0045s0039.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 83.5 | 1.3e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n s rqvtfskRr g++KKAeEL vLCda+v +i+fsstgkl eyss
Kaladp0045s0039.1.p 9 KKIDNVSARQVTFSKRRRGLFKKAEELAVLCDADVGLIVFSSTGKLSEYSS 59
68***********************************************96 PP
|
| 2 | K-box | 51.7 | 3.7e-18 | 93 | 175 | 18 | 100 |
K-box 18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
+++++kL +e+ + +++R+l GedL+ L+++eL++Le+ Le +l+++ ++K e ++++i++lq k +l een++Lr++++e
Kaladp0045s0039.1.p 93 NRNYTKLSQEVAEKSHQLRRLRGEDLQGLDIEELRELEKTLEFGLNRVIETKGEKIMNEINHLQAKGAQLMEENERLRRQVAE 175
57899***************************************************************************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 28.679 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 9.1E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.29E-38 | 3 | 70 | No hit | No description |
| PRINTS | PR00404 | 2.4E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 8.76E-31 | 3 | 75 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 2.4E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.4E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 2.4E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 13.054 | 89 | 179 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.0E-16 | 93 | 173 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MVREKIQIKK IDNVSARQVT FSKRRRGLFK KAEELAVLCD ADVGLIVFSS TGKLSEYSSS 60
SMKEILERYK MQSKYLEKLQ QPTPSLELQL VENRNYTKLS QEVAEKSHQL RRLRGEDLQG 120
LDIEELRELE KTLEFGLNRV IETKGEKIMN EINHLQAKGA QLMEENERLR RQVAEMSNNG 180
HVKLSGVSFS ETTAYEDGHS ESITNGSNNS NNGPPPESDD SSDTSLRLGL PY*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
