 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0045s0032.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 292aa MW: 32512.2 Da PI: 4.5264 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0045s0032.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.3 | 1.3e-18 | 59 | 112 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k
Kaladp0045s0032.1.p 59 KKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQPRQVAIWFQNRRARWK 112
5668999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 129.4 | 1.5e-41 | 58 | 150 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
ekkrrls +qvk+LE+sFe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlE+dy +Lk++yd+lk ++L++++++L+++
Kaladp0045s0032.1.p 58 EKKRRLSLHQVKALEQSFEVENKLEPERKVRLAQELGLQPRQVAIWFQNRRARWKTKQLERDYGVLKSNYDSLKLGFDALQRDKDSLHKQ 147
69***************************************************************************************9 PP
HD-ZIP_I/II 91 lke 93
+++
Kaladp0045s0032.1.p 148 IRD 150
986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MKRPRNSDSL GAALMSVSPD SDGLDQALVY SRELQSMLEG FDSDGCVEES CGGGQMSEKK 60
RRLSLHQVKA LEQSFEVENK LEPERKVRLA QELGLQPRQV AIWFQNRRAR WKTKQLERDY 120
GVLKSNYDSL KLGFDALQRD KDSLHKQIRD LKSKLNQETP DQSNNLLIED DGDDTELIIA 180
EPPQNAILND ISSVVSFSTD FKEGFTPTTT ATSSADSGFS AILNDSKGSP NGAVSSALLQ 240
SAILTASSCS GYHPELVKME ERSLFMVEES CDFFSEEQAP TLHWYCPDQW T*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 106 | 114 | RRARWKTKQ |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK068244 | 2e-37 | AK068244.1 Oryza sativa Japonica Group cDNA clone:J013140I04, full insert sequence. |
| GenBank | AK106818 | 2e-37 | AK106818.1 Oryza sativa Japonica Group cDNA clone:002-116-D05, full insert sequence. |
| GenBank | AP005391 | 2e-37 | AP005391.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBb0092C08. |
| GenBank | AP014964 | 2e-37 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 2e-37 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
| GenBank | CT829446 | 2e-37 | CT829446.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA031N19, full insert sequence. |
