PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0044s0073.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 432aa    MW: 47158.9 Da    PI: 6.0977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0044s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rgrWT+eEd++lv+++++ G g+W++ +++ g+ R++k+c++rw +yl
  Kaladp0044s0073.1.p 14 RGRWTAEEDDILVNYINKNGIGSWRSLPKKAGLLRCGKSCRLRWINYL 61
                         8*******************************99************97 PP
2Myb_DNA-binding49.88e-1667111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T +E++ ++++++ lG++ W++Ia+ ++ gRt++++k++w++ 
  Kaladp0044s0073.1.p  67 RGNFTSDEQDTIIKLHASLGNK-WSLIANQLP-GRTDNEIKNYWNST 111
                          89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.131961IPR017930Myb domain
SuperFamilySSF466891.72E-2811108IPR009057Homeodomain-like
SMARTSM007177.9E-121363IPR001005SANT/Myb domain
PfamPF002492.7E-141461IPR001005SANT/Myb domain
CDDcd001677.27E-101661No hitNo description
PROSITE profilePS5129424.21562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2465115IPR009057Homeodomain-like
SMARTSM007173.0E-1466114IPR001005SANT/Myb domain
PfamPF002493.0E-1467111IPR001005SANT/Myb domain
CDDcd001679.65E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MGRAPCCAKV GLNRGRWTAE EDDILVNYIN KNGIGSWRSL PKKAGLLRCG KSCRLRWINY  60
LRSDLKRGNF TSDEQDTIIK LHASLGNKWS LIANQLPGRT DNEIKNYWNS TLSRRVDTFR  120
RPVAEGQSQV LISGLTSSSG AAGEGAVTIV AVNRRRGRTS RAAMKKNKNS INERSNKSKP  180
VGGNQALYES NPIHSSSYNL SSITATLSRS HSTGSSITSA ATATSSPLLT LPQTPNLEKE  240
GCLLLPADEE DHALESLVLE SLLTSQNDTQ RGAQHQGDLV SKDASDCERV DLSFDDIGNF  300
DVELVEVNGA SGVLAGSRSS NDTINNKSSS SSNNVGHGVL KEASLNHQSM ILGFEECASL  360
GADWDWENIV HQDDDHNNNQ QWSSNIEEDG SIAWLWDYAH HQDSGGNNGV GKNQETYYEE  420
HREAMVAWLL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-71myb domain protein 111