PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0282.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 733aa    MW: 81172.8 Da    PI: 7.0076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0282.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.21e-2179134156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  Kaladp0043s0282.2.p  79 RKKYHRHTAEQIREMEALFKESPHPDEKQRQDLSKQLGLSSRQVKFWFQNRRTQIK 134
                          7999************************************************9877 PP
2START198.82.4e-622504742205
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                          +a+ a +el+++a++++p+Wv+s+    e++n+d++++ f ++            +ea+r++++v+++l++l ++++d   +W+e ++  
  Kaladp0043s0282.2.p 250 IANHAVEELIQMATVGAPLWVQSVeagrEILNYDVYMKLFCKETDtfsslrptEAIEASRDTRLVFANLPQLAQSFMDAD-KWKELFPtm 338
                          678999*********************************97755589*********************************.****99999 PP

                          ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
                START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                            ka+t++ i++g      ga+qlm+aelq+l+p+vp R+++f+R+++ql+a +w+ivdvSvd   ++  +s + ++ ++pSg++ie++s
  Kaladp0043s0282.2.p 339 isKATTIDIIRNGegpsrnGAVQLMFAELQMLTPMVPsREVYFIRSCKQLSASQWAIVDVSVDKYMDNA-ESLFKKCSKRPSGCIIEDTS 427
                          99******************************************************************9.8******************* PP

                          TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                          ngh+kv+wveh ++++  +h+++r +v+sg+a+ga++w+atlq qce
  Kaladp0043s0282.2.p 428 NGHCKVIWVEHLECQKIPVHNIYRTIVNSGQAFGASRWMATLQLQCE 474
                          **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2263130IPR009057Homeodomain-like
SuperFamilySSF466891.71E-2065137IPR009057Homeodomain-like
PROSITE profilePS5007118.10776136IPR001356Homeobox domain
SMARTSM003892.1E-1678140IPR001356Homeobox domain
PfamPF000464.7E-1979134IPR001356Homeobox domain
CDDcd000865.31E-1783134No hitNo description
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PROSITE profilePS5084838.423240478IPR002913START domain
SuperFamilySSF559616.46E-29242475No hitNo description
CDDcd088755.05E-101244474No hitNo description
SMARTSM002347.0E-56249475IPR002913START domain
PfamPF018525.2E-50250474IPR002913START domain
Gene3DG3DSA:3.30.530.202.0E-4357474IPR023393START-like domain
SuperFamilySSF559619.99E-12518703No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MSLIAGQAGI FHRADPAPVV TATAKVVERH NGGVRREEAV EISSDNSGPS CRSRSDDDIG  60
FEGEGNDEDD VNEQRKKKRK KYHRHTAEQI REMEALFKES PHPDEKQRQD LSKQLGLSSR  120
QVKFWFQNRR TQIKAFQERH ENSLLKSEME KLREENKLMR ETIQKTCCPS CGISTSGKES  180
SSSTEEKYLR IENKRLKSEV ENLQSALSKY SGPGTGLPDS GHAEQEPKSS LGLSTSAEVL  240
GLQKSTIMNI ANHAVEELIQ MATVGAPLWV QSVEAGREIL NYDVYMKLFC KETDTFSSLR  300
PTEAIEASRD TRLVFANLPQ LAQSFMDADK WKELFPTMIS KATTIDIIRN GEGPSRNGAV  360
QLMFAELQML TPMVPSREVY FIRSCKQLSA SQWAIVDVSV DKYMDNAESL FKKCSKRPSG  420
CIIEDTSNGH CKVIWVEHLE CQKIPVHNIY RTIVNSGQAF GASRWMATLQ LQCEHLVFLK  480
ATNVPTKEAN GIATVVGRKS TLTLARRMSS SFCRALGASS HHTWTKVAST TGDDIRVSSR  540
KNLHNPGEPH GLIVCAVSSV WIPVPPRELF DFIRDERHRH EWDMLSNGVP VQSITNLAKG  600
QDRGNSVTIQ ATESKDNPIW VLQDTCTNTF ESTIVYGLVD PTHMRSAVMN GCNSSNTAIL  660
PSGFSILSDG LESRPSVITS QPEDSNSGGS LLTMAIQALV NTSPTAEAVD SVSTLVSCAL  720
SNIRKCLQCE DI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17380QRKKKRKK
27480RKKKRKK
37680KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875609.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A2N9FB880.0A0A2N9FB88_FAGSY; Uncharacterized protein
STRINGXP_009338062.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]