PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0043s0275.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 362aa MW: 39337.9 Da PI: 7.6441 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.1 | 4.1e-13 | 120 | 164 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++lG+g+W+ Iar +Rt+ q+ s+ qky Kaladp0043s0275.1.p 120 PWTEEEHRLFLIGLHKLGKGDWRGIARNYVITRTPTQVASHAQKY 164 8*****************************89************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.434 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-16 | 115 | 170 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-17 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-10 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 117 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.46E-9 | 120 | 165 | No hit | No description |
Pfam | PF00249 | 9.7E-12 | 120 | 164 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MTRRCSHCSF DGHNSRTCPS RAASSSSSAA ISGSASCGGG GVKLFGVRLT DGSIMKKSAS 60 MGNLSSLAHY NSSPSTAAAS PNPSSPSSDT IGNALPAPDG CLSDDPAHVN RRSDRKKGTP 120 WTEEEHRLFL IGLHKLGKGD WRGIARNYVI TRTPTQVASH AQKYFIRQSN ASRRKRRTSL 180 FDMTPEMETE MPPAPERFLL PPPSSEIDHE NSVSLTNQNP ELHSMELTPE ETVKESDDTS 240 IEEANYFLPA PVVPTFYPAY VPVPFRFWSP NLAPTEEEYP ETSNHQVLKP IPVIPKDPIN 300 VDDLVGMSQL SIKETVKTRA DSHPLSMRLL GSPSRQSAFR PRRSASVPNL TQGSADSNPG 360 E* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021889228.1 | 1e-129 | transcription factor MYBS3 | ||||
TrEMBL | A0A1Q3B0D8 | 1e-126 | A0A1Q3B0D8_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | evm.model.supercontig_2092.1 | 1e-128 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47390.1 | 1e-75 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0043s0275.1.p |