PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0190.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 89aa    MW: 10094.5 Da    PI: 9.0722
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l  ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0043s0190.1.p 14 KGAWTKEEDDRLTAYIKAHGDGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                         79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129421.295965IPR017930Myb domain
SMARTSM007171.4E-121363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
SuperFamilySSF466895.64E-221588IPR009057Homeodomain-like
CDDcd001678.22E-101661No hitNo description
Gene3DG3DSA:1.10.10.603.2E-86588IPR009057Homeodomain-like
PROSITE profilePS512948.3756688IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDDRLTAYIK AHGDGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDVKRGNF THDEDELIIH FHSILGNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-15138826100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009109540.12e-55PREDICTED: transcription repressor MYB4
RefseqXP_013656744.12e-55transcription repressor MYB4-like
SwissprotP200261e-55MYB1_HORVU; Myb-related protein Hv1
TrEMBLA0A287S1Z55e-55A0A287S1Z5_HORVV; Uncharacterized protein
STRINGBra010736.1-P7e-55(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.13e-57myb domain protein 4