PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0131.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 97aa    MW: 10645.9 Da    PI: 8.7945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0131.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.6e-0723631454
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         d++ +   +L +l+P+ + + +s K+s + +L+++++YI+sL
  Kaladp0043s0131.1.p 23 DQMADLVCKLHRLIPEiQ-SSRSNKVSASKVLQETCNYIRSL 63
                         577888899*******77.89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.204963IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-82381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-72367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-52463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSSSRRSRSR QSSSGGSRNI SEDQMADLVC KLHRLIPEIQ SSRSNKVSAS KVLQETCNYI  60
RSLHQEIDDL SDRLAHLLAS SDTDSAQAAI IRSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920530.11e-39transcription factor PRE6-like
SwissprotQ9LJX13e-32PRE5_ARATH; Transcription factor PRE5
TrEMBLM5XQD91e-37M5XQD9_PRUPE; Uncharacterized protein
STRINGEMJ281142e-38(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-34bHLH family protein