PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0042s0269.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 790aa MW: 86605.2 Da PI: 5.604 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.9e-18 | 184 | 283 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlv+pkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ ++ +L +gD v+F++ + Kaladp0042s0269.3.p 184 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 272 99**************************556667778***************9989999999***9.********************766 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++lv+++++ Kaladp0042s0269.3.p 273 -PEGKLVMGFRK 283 .77777777776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.9E-30 | 177 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.22E-20 | 181 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.29E-22 | 182 | 283 | No hit | No description |
SMART | SM01019 | 7.6E-21 | 184 | 285 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 184 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-15 | 184 | 283 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.149 | 405 | 455 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 7.3E-12 | 410 | 452 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 790 aa Download sequence Send to blast |
MQWREAPNLY NSLLAQSEAH TRGPCDGGVS NGLNRYYSNE VFPLGSLEKQ SRREIDWSMR 60 RIARTSEIHE NGNSGVLMEM LSAKENSSAL RLEPLLKTSS ANESNCEMTA SGSLLRAAPL 120 SQPPKSFHSN HSSEFDPCSE TPVQNGRSRG DGRNKNQLLT RYLPRTTDEE LQKIAGSSEI 180 KPLFEKTLSA SDAGRIGRLV VPKKCAEAYF PHISQPEGLP LKVQDVKGKE WVFQFRFWPN 240 NNSRMYVLEG VTSYIQSMQL LAGDKVTFSR LEPEGKLVMG FRKASNGSTD LDDEPNKISN 300 NGDASARINF NLSRADKSGY IAKDIMNVKS SVSRKRKSST FSSNRHLLFE SMDVCELKIT 360 LEEAQRLIRP SPNHLSHVGI VENEIEEFED CPVIGKPTIF TTDQMGESIQ WAQCEDCLKW 420 RRLPADALLP AKWICSKNKW DLARSTCSSP QDISDEQLDN LLFPKNQSVS KKMRAANQEL 480 ETVEGLEGLD ALANLAILGE GQAIASSGHI TTKHPRHKMG CSCIVCIQPP SGKGLKHKQT 540 CDCTVCLTVK RRFQTLMLRR EKKQQEKDAE AASEKHQGCS LLIEKSPEND PLTQEDSSAA 600 TPTLKEVTDE GSVDISFGKE SSASTLKGQI DLNIKPERDD PLISSELDTL MFSYNTAEAV 660 DQMQSSIHCA SAEIVRDPTQ TVEVVDGTGS ASVTNQLVAA PPADAHPEKE SSPTVKVEET 720 IVNSTGTTSV TNQLVAAPPA DAHPEKESSP AVKVVEAIID GTDTARITNQ LAAARPDEES 780 TPTVTTTSG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 8e-59 | 164 | 286 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 332 | 337 | SRKRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467888.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 1e-165 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A067G7Y8 | 0.0 | A0A067G7Y8_CITSI; Uncharacterized protein | ||||
STRING | XP_006467887.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-141 | HSI2-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0042s0269.3.p |