PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0042s0269.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 917aa MW: 100234 Da PI: 6.6537 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57 | 3.6e-18 | 311 | 410 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l+ sd+++ grlv+pkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ ++ +L +gD v+F++ + Kaladp0042s0269.2.p 311 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 399 99**************************556667778***************9989999999***9.********************766 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++lv+++++ Kaladp0042s0269.2.p 400 -PEGKLVMGFRK 410 .77777777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-29 | 304 | 412 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-20 | 308 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.38E-22 | 309 | 410 | No hit | No description |
Pfam | PF02362 | 1.5E-15 | 311 | 410 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.6E-21 | 311 | 412 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.251 | 311 | 412 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.149 | 532 | 582 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.7E-12 | 537 | 579 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 917 aa Download sequence Send to blast |
MAGGSAPASI PACVIVAPLF TRRGDFVKFS THKLQAGYLV SHAIRWLTKN SPLQHIHCGC 60 IASVQNFTLL DAGGVECITC AKRSGRHVLP GNLAYPPPSH GVYKTPFSER IRDLSTKSWS 120 QFSGVGPMQW REAPNLYNSL LAQSEAHTRG PCDGGVSNGL NRYYSNEVFP LGSLEKQSRR 180 EIDWSMRRIA RTSEIHENGN SGVLMEMLSA KENSSALRLE PLLKTSSANE SNCEMTASGS 240 LLRAAPLSQP PKSFHSNHSS EFDPCSETPV QNGRSRGDGR NKNQLLTRYL PRTTDEELQK 300 IAGSSEIKPL FEKTLSASDA GRIGRLVVPK KCAEAYFPHI SQPEGLPLKV QDVKGKEWVF 360 QFRFWPNNNS RMYVLEGVTS YIQSMQLLAG DKVTFSRLEP EGKLVMGFRK ASNGSTDLDD 420 EPNKISNNGD ASARINFNLS RADKSGYIAK DIMNVKSSVS RKRKSSTFSS NRHLLFESMD 480 VCELKITLEE AQRLIRPSPN HLSHVGIVEN EIEEFEDCPV IGKPTIFTTD QMGESIQWAQ 540 CEDCLKWRRL PADALLPAKW ICSKNKWDLA RSTCSSPQDI SDEQLDNLLF PKNQSVSKKM 600 RAANQELETV EGLEGLDALA NLAILGEGQA IASSGHITTK HPRHKMGCSC IVCIQPPSGK 660 GLKHKQTCDC TVCLTVKRRF QTLMLRREKK QQEKDAEAAS EKHQGCSLLI EKSPENDPLT 720 QEDSSAATPT LKEVTDEGSV DISFGKESSA STLKGQIDLN IKPERDDPLI SSELDTLMFS 780 YNTAEAVDQM QSSIHCASAE IVRDPTQTVE VVDGTGSASV TNQLVAAPPA DAHPEKESSP 840 TVKVEETIVN STGTTSVTNQ LVAAPPADAH PEKESSPAVK VVEAIIDGTD TARITNQLAA 900 ARPDEESTPT VTTTSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 5e-58 | 291 | 413 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 459 | 464 | SRKRKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467888.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X2 | ||||
Swissprot | Q0D5G4 | 1e-163 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A067G7Y8 | 0.0 | A0A067G7Y8_CITSI; Uncharacterized protein | ||||
STRING | XP_006467887.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-139 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0042s0269.2.p |