PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0269.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 928aa    MW: 101824 Da    PI: 6.3979
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0269.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.93.7e-18322421198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k+l+ sd+++ grlv+pkk+ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G  ++ ++ +L +gD v+F++ +
  Kaladp0042s0269.1.p 322 FEKTLSASDAGRIGRLVVPKKCAEAYfpHISQPEGLPLKVQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTSYIQSMQLLAGDKVTFSRLE 410
                          99**************************556667778***************9989999999***9.********************766 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++lv+++++
  Kaladp0042s0269.1.p 411 -PEGKLVMGFRK 421
                          .77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-29315423IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-20319421IPR015300DNA-binding pseudobarrel domain
CDDcd100174.48E-22320421No hitNo description
PfamPF023621.5E-15322421IPR003340B3 DNA binding domain
SMARTSM010197.6E-21322423IPR003340B3 DNA binding domain
PROSITE profilePS5086311.251322423IPR003340B3 DNA binding domain
PROSITE profilePS5105014.149543593IPR011124Zinc finger, CW-type
PfamPF074968.8E-12548590IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MAARICFNRS CTEVKSTRSW NGWRLGTGEY SSLCDRCASL YEEGRFCEVF HSQAPGWVPC  60
QSCNKHIHCG CIASVQNFTL LDAGGVECIT CAKRSGRHVL PGNLAYPPPS HGVYKTPFSE  120
RIRDLSTKSW SQFSGVGPMQ WREAPNLYNS LLAQSEAHTR GPCDGGVSNG LNRYYSNEVF  180
PLGSLEKQSR REIDWSMRRI ARTSEIHENG NSGVLMEMLS AKENSSALRL EPLLKTSSAN  240
ESNCEMTASG SLLRAAPLSQ PPKSFHSNHS SEFDPCSETP VQNGRSRGDG RNKNQLLTRY  300
LPRTTDEELQ KIAGSSEIKP LFEKTLSASD AGRIGRLVVP KKCAEAYFPH ISQPEGLPLK  360
VQDVKGKEWV FQFRFWPNNN SRMYVLEGVT SYIQSMQLLA GDKVTFSRLE PEGKLVMGFR  420
KASNGSTDLD DEPNKISNNG DASARINFNL SRADKSGYIA KDIMNVKSSV SRKRKSSTFS  480
SNRHLLFESM DVCELKITLE EAQRLIRPSP NHLSHVGIVE NEIEEFEDCP VIGKPTIFTT  540
DQMGESIQWA QCEDCLKWRR LPADALLPAK WICSKNKWDL ARSTCSSPQD ISDEQLDNLL  600
FPKNQSVSKK MRAANQELET VEGLEGLDAL ANLAILGEGQ AIASSGHITT KHPRHKMGCS  660
CIVCIQPPSG KGLKHKQTCD CTVCLTVKRR FQTLMLRREK KQQEKDAEAA SEKHQGCSLL  720
IEKSPENDPL TQEDSSAATP TLKEVTDEGS VDISFGKESS ASTLKGQIDL NIKPERDDPL  780
ISSELDTLMF SYNTAEAVDQ MQSSIHCASA EIVRDPTQTV EVVDGTGSAS VTNQLVAAPP  840
ADAHPEKESS PTVKVEETIV NSTGTTSVTN QLVAAPPADA HPEKESSPAV KVVEAIIDGT  900
DTARITNQLA AARPDEESTP TVTTTSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-583024242126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1470475SRKRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467887.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G41e-163Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067G7Y20.0A0A067G7Y2_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-156high-level expression of sugar-inducible gene 2