PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0042s0058.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 236aa MW: 26646.9 Da PI: 10.5602 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.4 | 3.5e-15 | 136 | 225 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ ++ps+v++ +l lp f+++h + ++++ +tl de+g ++ + ++ + l++GWk+F+ a +L +gD +vF+l++ + f Kaladp0042s0058.1.p 136 FVRPMLPSHVSSCFWLGLPSYFCKQHL-P-KQDTVMTLVDEKGDEYPTRW--LPRKTG--LSGGWKGFAVARELVDGDALVFQLISPTAF 219 778899*****************9995.3.36789***************..555544..************************987777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kaladp0042s0058.1.p 220 --KVYIVR 225 ..777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-19 | 128 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-23 | 130 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.61E-26 | 134 | 225 | No hit | No description |
Pfam | PF02362 | 8.6E-14 | 136 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-22 | 136 | 227 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.758 | 136 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MTRPHTTQSS KMVMPSYEQC RQKRLEENKK RMEALNLPQL AKTLREISTP PRPTPAKRRP 60 YAKQLVAVRR SPRVANMPAG PVYVEVDVAV GRLSIPRRLS KPRAMSGAYA TNEAREWSIT 120 RAEELQSALD QAYPSFVRPM LPSHVSSCFW LGLPSYFCKQ HLPKQDTVMT LVDEKGDEYP 180 TRWLPRKTGL SGGWKGFAVA RELVDGDALV FQLISPTAFK VYIVRVEGFK EGTKQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022772861.1 | 8e-88 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q1G3M3 | 7e-62 | Y3918_ARATH; B3 domain-containing protein At3g19184 | ||||
TrEMBL | A0A2P5ASS8 | 9e-85 | A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein | ||||
STRING | XP_008220213.1 | 4e-86 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 1e-61 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0042s0058.1.p |
Publications ? help Back to Top | |||
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