PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0042s0046.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 419aa MW: 48192.1 Da PI: 8.9568 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.5 | 1.8e-16 | 11 | 91 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 ffkv +++k+ + +p+ f e+++ + ++ t l +sg++W v++ + ++ ++t+GW+ Fv++n +++gDf+ Fkl g+ Kaladp0042s0046.1.p 11 FFKVYFADHSFKQ--MKIPRAF-EDYMDE-RKFGTAELAGRSGQTWLVEV--DYDGKDLYFTDGWQAFVEDNMVQDGDFLFFKLLGN 91 7888877777766..8*****9.588544.45559***************..888888*************************9886 PP | |||||||
2 | B3 | 56.8 | 4.2e-18 | 167 | 258 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k t s+ + l++p fa+eh+++ +++ +++l+++++ sW+v++ +++g++ l +GW F+++n+L+ gD++ F+l+gr Kaladp0042s0046.1.p 167 FEKHITISNIEHGHYLRIPSYFAQEHSLNYKSNEKMVLRTSRNSSWKVNI--INRGGEISLCRGWAAFARENNLRLGDVCNFELVGR--L 252 677777777777899***********88888999****************..999999*************************9985..5 PP ..EEEE CS B3 91 elvvkv 96 e++v+v Kaladp0042s0046.1.p 253 EMLVHV 258 556665 PP | |||||||
3 | B3 | 53.2 | 5.5e-17 | 318 | 413 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 + +++++v ks+ l +p f++e+++ e++ +++l++e+ W + +i++k+ ++ + l++GW +Fv++n++kegD++ F+l++r e Kaladp0042s0046.1.p 318 VALMKKHHVEKSA-LNIPAWFFRENSLHYERNEKMVLRSEKDSLWLLSIIHSKYNNKtlCRLSGGWIDFVRDNNIKEGDTCKFELVNRLE 406 4455556666665.***********99999999****************99777777679999*********************997644 PP E..EEEE CS B3 90 felvvkv 96 +++++ Kaladp0042s0046.1.p 407 MKFHIMP 413 4344444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.94E-18 | 7 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-19 | 8 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.17E-16 | 9 | 100 | No hit | No description |
PROSITE profile | PS50863 | 13.07 | 9 | 102 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-14 | 11 | 91 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-11 | 11 | 102 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-22 | 160 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-20 | 164 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.09E-16 | 165 | 258 | No hit | No description |
PROSITE profile | PS50863 | 14.015 | 167 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-15 | 167 | 258 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-13 | 167 | 264 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 314 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 314 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.15E-16 | 315 | 411 | No hit | No description |
PROSITE profile | PS50863 | 12.323 | 316 | 415 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-14 | 317 | 413 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-16 | 317 | 415 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MDAEVDNLPE FFKVYFADHS FKQMKIPRAF EDYMDERKFG TAELAGRSGQ TWLVEVDYDG 60 KDLYFTDGWQ AFVEDNMVQD GDFLFFKLLG NLMFSFIIYD ETMCEKEAAF NGKCSRGRDG 120 VVEAVEEPMG LKPVKRRNMG CSQPEGSLFT SMDKTAVKTS TSVKPSFEKH ITISNIEHGH 180 YLRIPSYFAQ EHSLNYKSNE KMVLRTSRNS SWKVNIINRG GEISLCRGWA AFARENNLRL 240 GDVCNFELVG RLEMLVHVTH QDKVIEQKQL NVAAPKIRPS ERAVGVSQPK LRQGSPITTE 300 RQKAAGRSRP SLVKPSFVAL MKKHHVEKSA LNIPAWFFRE NSLHYERNEK MVLRSEKDSL 360 WLLSIIHSKY NNKTLCRLSG GWIDFVRDNN IKEGDTCKFE LVNRLEMKFH IMPRSKQD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | LKPVKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 4e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0042s0046.1.p |