PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0751.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 317aa    MW: 35196 Da    PI: 9.2032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0751.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.96.6e-17113201185
                          EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+l +sdv+ ++r++lpkk ae+h    ++k  e++ ++++d++g   W++k+++  +++s++yv++ +  +Fv a+gL++gD ++ +
  Kaladp0040s0751.1.p 113 FRKILQKSDVSYLRRIILPKKAAEAHlpvlQIK--EGIPIKIYDLDGrHIWTFKYRFwpNNSSRMYVFE-NAGDFVAAHGLQAGDCFIMY 199
                          889*************************76555..66779999****678*****99888888889999.9***************9998 PP

                          E- CS
                   B3  84 ld 85 
                          ld
  Kaladp0040s0751.1.p 200 LD 201
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.3E-23108209IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-25111201No hitNo description
SuperFamilySSF1019362.75E-21111208IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-17113215IPR003340B3 DNA binding domain
PROSITE profilePS508639.206113215IPR003340B3 DNA binding domain
PfamPF023629.9E-14113201IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEGVRSGFTG MGAKGVNGSG KDAAVAACDL VAASRFRVVT RRRADRARRR RSNLSTTYAF  60
SNLTAASNNQ HVAPYSVAVA VAPPPPPPSS PKPPPFRLTP LYDIDRTNLR FLFRKILQKS  120
DVSYLRRIIL PKKAAEAHLP VLQIKEGIPI KIYDLDGRHI WTFKYRFWPN NSSRMYVFEN  180
AGDFVAAHGL QAGDCFIMYL DIVTQYLVIE AKKSEVSDER KVIIAAESEV KPIRSSAVVP  240
DYILTPPAPE VANPPSDIFV NFPPREDSVS QFVYDTSSFC NESPLDFLGG SAINSSNHYF  300
QSDDFINNLP FGDFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A8e-491092231115B3 domain-containing transcription factor FUS3
6j9b_D8e-491092231115B3 domain-containing transcription factor FUS3
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-57B3 family protein