 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Kaladp0040s0190.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 225aa MW: 25634.4 Da PI: 10.2583 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0040s0190.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 91.2 | 5.3e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRr+g+lKKA+ELS+LCdaev +iifsstg+lye+ss
Kaladp0040s0190.1.p 10 RIDNSTSRQVTFSKRRKGLLKKAKELSILCDAEVGLIIFSSTGRLYEFSS 59
8***********************************************96 PP
|
| 2 | K-box | 83 | 6.5e-28 | 82 | 170 | 10 | 98 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
+++++ +q+e+a ++++enLq ++R+l+Ge ++ + + eLq Le+qLe slk +R kK+ell++qi+el++k + ++en +L +k
Kaladp0040s0190.1.p 82 PTTEMKFWQTEAAMFRQQLENLQDKHRQLMGEAINGMGIHELQALENQLEMSLKGVRMKKHELLTDQIRELREKGSRKHQENLELCRKA 170
567899*****************************************************************************999885 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.945 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.7E-32 | 2 | 89 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.79E-44 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 1.6E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.7E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 1.6E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.1E-25 | 83 | 169 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 13.805 | 86 | 179 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 225 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRKGLLK KAKELSILCD AEVGLIIFSS TGRLYEFSST 60
SMKSVIERYN RSKGEGFQLL NPTTEMKFWQ TEAAMFRQQL ENLQDKHRQL MGEAINGMGI 120
HELQALENQL EMSLKGVRMK KHELLTDQIR ELREKGSRKH QENLELCRKA NQVITRDEST 180
EPPARARVDG TTREAPGADT LLAPLTLRPS SAEEVRSYHT YISL*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
