PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0039s0641.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22988.2 Da PI: 5.5212 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.8 | 2.8e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkCa++C++apyf+ +q + +f +vh++FGasn +kll +lp + r+ a+ ++ yeA ar++dP+yG+v+++l lqqq+ q Kaladp0039s0641.1.p 7 SCGACKFLRRKCATECIFAPYFCYDQaAVHFSAVHRVFGASNFSKLLLHLPMHSRSVAAMTVSYEALARMHDPIYGCVAHVLLLQQQVVQ 96 6************************9789************************************************************* PP DUF260 90 lkaelallkee 100 l++e+++l+++ Kaladp0039s0641.1.p 97 LEKEIEMLEKQ 107 *****999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.733 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-33 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCAT ECIFAPYFCY DQAAVHFSAV HRVFGASNFS KLLLHLPMHS 60 RSVAAMTVSY EALARMHDPI YGCVAHVLLL QQQVVQLEKE IEMLEKQMAM AWFDISGAAA 120 APSSTQSANI DFYGLQVETT ELDMDVRGYS TAQQTSSQLL TASANAAAID QRSREEKSWF 180 LSPDPMGQES FMHCYAESFA ETLNTQVI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-32 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-32 | 3 | 108 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316271.2 | 3e-62 | LOB domain-containing protein 29 | ||||
Refseq | XP_011002633.1 | 2e-62 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9LHS8 | 5e-52 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9HT79 | 5e-61 | B9HT79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20800.1 | 8e-62 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06080.1 | 4e-48 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0039s0641.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|