PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0582.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 1492aa MW: 164622 Da PI: 5.7988

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0582.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.7e-08	947	989	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g WT E +v vk +G++ + +I+ ++g +++ qcks++ k Kaladp0039s0582.2.p 947 GYWTDREKSVFVSSVKSYGKD-FYKISGCIG-TKSKDQCKSFYSK 989 67***************99.*****.********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	713	774	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.938	725	776	IPR017884	SANT domain
SMART	SM00717	1.1E-6	726	774	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.65E-10	943	995	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.752	944	995	IPR017884	SANT domain
SMART	SM00717	1.8E-5	945	993	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-4	949	987	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1492 aa Download sequence Send to blast
MPPGPLPWDP KEYFKAGSRS LTASRELTLS GSPKVHKRPV EGNEALIKTV RLDHELLQPS 60 DEVLEDAGAF QLRKRLCISS AVDENCSSNS GVSGSQKDMK LDGSADVLAE GACNASLSHS 120 LRMPHQESTS ISEGRVLEVI TDQKLADGIQ HHHDPNGYSL RLDCKPIRWP LSGSFSSHES 180 ELSQSSSSKS VPVEFSCSRI RLPLENRKSY QSATEDTITC VTPTTPSEDM SPWKRPRLRW 240 GEGLAKFEKT KSSGPNDMPT KSDPVSVISA QISYTASLVT LPSTACNSSP ESEEKSTSKA 300 VMADSRSGVT RTMFSECSNH LGSTLFNLET LDLSVTNHTV PSLIEVINYD NQCSSDRSFR 360 SCSAMSDLLL LKSTILQAID MTESQVDLLE NELKSFDDEC GCNDLRFLPS DAPTSKFIKE 420 FGKVQEGASG MSCGHALPSN SSTKLFTLKV PLDSGNSGLK ADMDSPGTVT SKLVELSTFT 480 EPHVENGTRN DVDRCFDLDA SCFPQEIQKT SKFTSQEGRK SNFCVDAFVG NNNSELVSSD 540 DHWHMSLDET EQLIDSIRAS NKESADKASE QFNGVFPVAE RIQGDSVEEG CSGDLFIREI 600 LIRKKKALRF KEHAVILKWK ALHSTWKDDK RLLSVRTHRP KAQKQWEMFS QTAQNNNPSV 660 NSNSLHDTNS SLNMGKLPFV SHMKHCRSVL KMPALILDDD ERRMCRFLSR NGLVEDPCAV 720 EKERSMINVW TSEERDIFRD KLASLGKDFR NIASFLDYKT TADCVEFYYK NHKSGSFANT 780 VEKQERRMLD NSLYCNTYLV TSGKKWDRNM NTASLDILGA ASEIMARNSE SKEKKKKNSC 840 NILLHGLGCI RRPPKDSLIS DRPSDFRLAE YEIGTTDSEI LPGACGSASS EAVSSCLTSS 900 VNQEEGHRNG ISKTLSIISE PLSIPEDMQT DDYETCSEES SCELDVGYWT DREKSVFVSS 960 VKSYGKDFYK ISGCIGTKSK DQCKSFYSKA RKCLGLDVEL PDNDHEQQSV IDDSNGDGSI 1020 AVFTSTLEAV SDTGSYKLNQ RVDEDLSLYA SVTSNVDSLS PDASMKLRTC HDQLKDKKGS 1080 LVLPSAEAKV EGDSVDRSAP DPDKLCVCNK SAVSTDTDAQ ASANKSVDIS PSLPFVVHQV 1140 SSFAQVEKEK CSMEPPLLHN QCGKTDTSRG SFQNIVSYFT GDAGTGKAPR KYSIDDRTFE 1200 FDASAPRHLY MSKGSVGTET SQDSVLHHTS FGRSNSTPMY TAALPTPMVP FEKNSVGEMQ 1260 EHFQRSHYVG NHLLNPECAP SDKFSVSHNF EKEKEKKGLA WNLNFEDSTV SRDSNSDSEN 1320 RLQQYTCIPQ GGYIQKCNSL NSNCSINDFP YFKNLVGPKK QGKQGNIKLF GQVLIPPTAP 1380 ESHFDSDLME ESKFTQFAQL NGAQIDMGPS NQHDMFSGNE NLPVRCFWDG RRMQNAPLLA 1440 SRPILLSHDA SSSSILDCKP LQTSAVPNVN APPNAGSIFG NSLNRCTMPR L*

Sequence ? help Back to Top

Protein Sequence Length: 1492 aa Download sequence Send to blast

MPPGPLPWDP KEYFKAGSRS LTASRELTLS GSPKVHKRPV EGNEALIKTV RLDHELLQPS  60
DEVLEDAGAF QLRKRLCISS AVDENCSSNS GVSGSQKDMK LDGSADVLAE GACNASLSHS  120
LRMPHQESTS ISEGRVLEVI TDQKLADGIQ HHHDPNGYSL RLDCKPIRWP LSGSFSSHES  180
ELSQSSSSKS VPVEFSCSRI RLPLENRKSY QSATEDTITC VTPTTPSEDM SPWKRPRLRW  240
GEGLAKFEKT KSSGPNDMPT KSDPVSVISA QISYTASLVT LPSTACNSSP ESEEKSTSKA  300
VMADSRSGVT RTMFSECSNH LGSTLFNLET LDLSVTNHTV PSLIEVINYD NQCSSDRSFR  360
SCSAMSDLLL LKSTILQAID MTESQVDLLE NELKSFDDEC GCNDLRFLPS DAPTSKFIKE  420
FGKVQEGASG MSCGHALPSN SSTKLFTLKV PLDSGNSGLK ADMDSPGTVT SKLVELSTFT  480
EPHVENGTRN DVDRCFDLDA SCFPQEIQKT SKFTSQEGRK SNFCVDAFVG NNNSELVSSD  540
DHWHMSLDET EQLIDSIRAS NKESADKASE QFNGVFPVAE RIQGDSVEEG CSGDLFIREI  600
LIRKKKALRF KEHAVILKWK ALHSTWKDDK RLLSVRTHRP KAQKQWEMFS QTAQNNNPSV  660
NSNSLHDTNS SLNMGKLPFV SHMKHCRSVL KMPALILDDD ERRMCRFLSR NGLVEDPCAV  720
EKERSMINVW TSEERDIFRD KLASLGKDFR NIASFLDYKT TADCVEFYYK NHKSGSFANT  780
VEKQERRMLD NSLYCNTYLV TSGKKWDRNM NTASLDILGA ASEIMARNSE SKEKKKKNSC  840
NILLHGLGCI RRPPKDSLIS DRPSDFRLAE YEIGTTDSEI LPGACGSASS EAVSSCLTSS  900
VNQEEGHRNG ISKTLSIISE PLSIPEDMQT DDYETCSEES SCELDVGYWT DREKSVFVSS  960
VKSYGKDFYK ISGCIGTKSK DQCKSFYSKA RKCLGLDVEL PDNDHEQQSV IDDSNGDGSI  1020
AVFTSTLEAV SDTGSYKLNQ RVDEDLSLYA SVTSNVDSLS PDASMKLRTC HDQLKDKKGS  1080
LVLPSAEAKV EGDSVDRSAP DPDKLCVCNK SAVSTDTDAQ ASANKSVDIS PSLPFVVHQV  1140
SSFAQVEKEK CSMEPPLLHN QCGKTDTSRG SFQNIVSYFT GDAGTGKAPR KYSIDDRTFE  1200
FDASAPRHLY MSKGSVGTET SQDSVLHHTS FGRSNSTPMY TAALPTPMVP FEKNSVGEMQ  1260
EHFQRSHYVG NHLLNPECAP SDKFSVSHNF EKEKEKKGLA WNLNFEDSTV SRDSNSDSEN  1320
RLQQYTCIPQ GGYIQKCNSL NSNCSINDFP YFKNLVGPKK QGKQGNIKLF GQVLIPPTAP  1380
ESHFDSDLME ESKFTQFAQL NGAQIDMGPS NQHDMFSGNE NLPVRCFWDG RRMQNAPLLA  1440
SRPILLSHDA SSSSILDCKP LQTSAVPNVN APPNAGSIFG NSLNRCTMPR L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	687	777	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	687	777	4	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-85	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0582.2.p