PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0582.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 1494aa MW: 164860 Da PI: 5.5991

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0582.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24	8.8e-08	949	991	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g WT E +v vk +G++ + +I+ ++g +++ qcks++ k Kaladp0039s0582.1.p 949 GYWTDREKSVFVSSVKSYGKD-FYKISGCIG-TKSKDQCKSFYSK 991 67***************99.*****.********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.87E-11	715	776	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.938	727	778	IPR017884	SANT domain
SMART	SM00717	1.1E-6	728	776	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.65E-10	945	997	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.752	946	997	IPR017884	SANT domain
SMART	SM00717	1.8E-5	947	995	IPR001005	SANT/Myb domain
CDD	cd00167	1.35E-4	951	989	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1494 aa Download sequence Send to blast
MTSAFILGTK SLFLDYKISD VKGARGLQNS TTCMEDRNPS LFEGNEALIK TVRLDHELLQ 60 PSDEVLEDAG AFQLRKRLCI SSAVDENCSS NSGVSGSQKD MKLDGSADVL AEGACNASLS 120 HSLRMPHQES TSISEGRVLE VITDQKLADG IQHHHDPNGY SLRLDCKPIR WPLSGSFSSH 180 ESELSQSSSS KSVPVEFSCS RIRLPLENRK SYQSATEDTI TCVTPTTPSE DMSPWKRPRL 240 RWGEGLAKFE KTKSSGPNDM PTKSDPVSVI SAQISYTASL VTLPSTACNS SPESEEKSTS 300 KAVMADSRSG VTRTMFSECS NHLGSTLFNL ETLDLSVTNH TVPSLIEVIN YDNQCSSDRS 360 FRSCSAMSDL LLLKSTILQA IDMTESQVDL LENELKSFDD ECGCNDLRFL PSDAPTSKFI 420 KEFGKVQEGA SGMSCGHALP SNSSTKLFTL KVPLDSGNSG LKADMDSPGT VTSKLVELST 480 FTEPHVENGT RNDVDRCFDL DASCFPQEIQ KTSKFTSQEG RKSNFCVDAF VGNNNSELVS 540 SDDHWHMSLD ETEQLIDSIR ASNKESADKA SEQFNGVFPV AERIQGDSVE EGCSGDLFIR 600 EILIRKKKAL RFKEHAVILK WKALHSTWKD DKRLLSVRTH RPKAQKQWEM FSQTAQNNNP 660 SVNSNSLHDT NSSLNMGKLP FVSHMKHCRS VLKMPALILD DDERRMCRFL SRNGLVEDPC 720 AVEKERSMIN VWTSEERDIF RDKLASLGKD FRNIASFLDY KTTADCVEFY YKNHKSGSFA 780 NTVEKQERRM LDNSLYCNTY LVTSGKKWDR NMNTASLDIL GAASEIMARN SESKEKKKKN 840 SCNILLHGLG CIRRPPKDSL ISDRPSDFRL AEYEIGTTDS EILPGACGSA SSEAVSSCLT 900 SSVNQEEGHR NGISKTLSII SEPLSIPEDM QTDDYETCSE ESSCELDVGY WTDREKSVFV 960 SSVKSYGKDF YKISGCIGTK SKDQCKSFYS KARKCLGLDV ELPDNDHEQQ SVIDDSNGDG 1020 SIAVFTSTLE AVSDTGSYKL NQRVDEDLSL YASVTSNVDS LSPDASMKLR TCHDQLKDKK 1080 GSLVLPSAEA KVEGDSVDRS APDPDKLCVC NKSAVSTDTD AQASANKSVD ISPSLPFVVH 1140 QVSSFAQVEK EKCSMEPPLL HNQCGKTDTS RGSFQNIVSY FTGDAGTGKA PRKYSIDDRT 1200 FEFDASAPRH LYMSKGSVGT ETSQDSVLHH TSFGRSNSTP MYTAALPTPM VPFEKNSVGE 1260 MQEHFQRSHY VGNHLLNPEC APSDKFSVSH NFEKEKEKKG LAWNLNFEDS TVSRDSNSDS 1320 ENRLQQYTCI PQGGYIQKCN SLNSNCSIND FPYFKNLVGP KKQGKQGNIK LFGQVLIPPT 1380 APESHFDSDL MEESKFTQFA QLNGAQIDMG PSNQHDMFSG NENLPVRCFW DGRRMQNAPL 1440 LASRPILLSH DASSSSILDC KPLQTSAVPN VNAPPNAGSI FGNSLNRCTM PRL*

Sequence ? help Back to Top

Protein Sequence Length: 1494 aa Download sequence Send to blast

MTSAFILGTK SLFLDYKISD VKGARGLQNS TTCMEDRNPS LFEGNEALIK TVRLDHELLQ  60
PSDEVLEDAG AFQLRKRLCI SSAVDENCSS NSGVSGSQKD MKLDGSADVL AEGACNASLS  120
HSLRMPHQES TSISEGRVLE VITDQKLADG IQHHHDPNGY SLRLDCKPIR WPLSGSFSSH  180
ESELSQSSSS KSVPVEFSCS RIRLPLENRK SYQSATEDTI TCVTPTTPSE DMSPWKRPRL  240
RWGEGLAKFE KTKSSGPNDM PTKSDPVSVI SAQISYTASL VTLPSTACNS SPESEEKSTS  300
KAVMADSRSG VTRTMFSECS NHLGSTLFNL ETLDLSVTNH TVPSLIEVIN YDNQCSSDRS  360
FRSCSAMSDL LLLKSTILQA IDMTESQVDL LENELKSFDD ECGCNDLRFL PSDAPTSKFI  420
KEFGKVQEGA SGMSCGHALP SNSSTKLFTL KVPLDSGNSG LKADMDSPGT VTSKLVELST  480
FTEPHVENGT RNDVDRCFDL DASCFPQEIQ KTSKFTSQEG RKSNFCVDAF VGNNNSELVS  540
SDDHWHMSLD ETEQLIDSIR ASNKESADKA SEQFNGVFPV AERIQGDSVE EGCSGDLFIR  600
EILIRKKKAL RFKEHAVILK WKALHSTWKD DKRLLSVRTH RPKAQKQWEM FSQTAQNNNP  660
SVNSNSLHDT NSSLNMGKLP FVSHMKHCRS VLKMPALILD DDERRMCRFL SRNGLVEDPC  720
AVEKERSMIN VWTSEERDIF RDKLASLGKD FRNIASFLDY KTTADCVEFY YKNHKSGSFA  780
NTVEKQERRM LDNSLYCNTY LVTSGKKWDR NMNTASLDIL GAASEIMARN SESKEKKKKN  840
SCNILLHGLG CIRRPPKDSL ISDRPSDFRL AEYEIGTTDS EILPGACGSA SSEAVSSCLT  900
SSVNQEEGHR NGISKTLSII SEPLSIPEDM QTDDYETCSE ESSCELDVGY WTDREKSVFV  960
SSVKSYGKDF YKISGCIGTK SKDQCKSFYS KARKCLGLDV ELPDNDHEQQ SVIDDSNGDG  1020
SIAVFTSTLE AVSDTGSYKL NQRVDEDLSL YASVTSNVDS LSPDASMKLR TCHDQLKDKK  1080
GSLVLPSAEA KVEGDSVDRS APDPDKLCVC NKSAVSTDTD AQASANKSVD ISPSLPFVVH  1140
QVSSFAQVEK EKCSMEPPLL HNQCGKTDTS RGSFQNIVSY FTGDAGTGKA PRKYSIDDRT  1200
FEFDASAPRH LYMSKGSVGT ETSQDSVLHH TSFGRSNSTP MYTAALPTPM VPFEKNSVGE  1260
MQEHFQRSHY VGNHLLNPEC APSDKFSVSH NFEKEKEKKG LAWNLNFEDS TVSRDSNSDS  1320
ENRLQQYTCI PQGGYIQKCN SLNSNCSIND FPYFKNLVGP KKQGKQGNIK LFGQVLIPPT  1380
APESHFDSDL MEESKFTQFA QLNGAQIDMG PSNQHDMFSG NENLPVRCFW DGRRMQNAPL  1440
LASRPILLSH DASSSSILDC KPLQTSAVPN VNAPPNAGSI FGNSLNRCTM PRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	689	779	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	689	779	4	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-86	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0582.1.p