PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ARF

Protein Properties

Length: 641aa MW: 70180.2 Da PI: 6.8508

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0575.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.1	9.4e-25	106	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF Kaladp0039s0575.1.p 106 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TILAKDVHGQTWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFL 193 89**************************997556555..89******************************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 +++++el+v+v+r+ Kaladp0039s0575.1.p 194 --RDENGELCVGVRRA 207 ..569999****97 PP
2	Auxin_resp	111.8	6.7e-37	259	342	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+++++F++vY+Pra+t+eF+v+++ v++a++v+++ GmRfkm fetedss++++ +Gt+++ + +dpvrWpnS+Wr+L+ Kaladp0039s0575.1.p 259 AVSLAASGKPFQIVYYPRAGTPEFCVRASVVSEAMRVQWCCGMRFKMPFETEDSSRISWfMGTISAAQVADPVRWPNSPWRLLQ 342 678899****************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-37	99	210	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.22E-30	99	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.63E-23	105	206	No hit	No description
SMART	SM01019	2.6E-22	106	208	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-22	106	207	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.507	106	208	IPR003340	B3 DNA binding domain
Pfam	PF06507	3.5E-32	259	342	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence Send to blast
MDKCLDPQLW HACAGGMVQM PPVGTNVFYF PQGHSEHASS DVDFRAFAKL PSMFLCRVSA 60 VKYMADPDSD EVFAKIRLLP TNVFDLAADD AAFSGAVDDQ DPPASFAKTL TQSDANNGGG 120 FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGQTWKFRH IYRGTPRRHL LTTGWSNFVN 180 HKKLVAGDSI VFLRDENGEL CVGVRRATRG IGGCDPQVCW NPAGGNFEST YGGGDDRKRM 240 QVGDGRMRGR VKAESVLEAV SLAASGKPFQ IVYYPRAGTP EFCVRASVVS EAMRVQWCCG 300 MRFKMPFETE DSSRISWFMG TISAAQVADP VRWPNSPWRL LQVAWDEPDL LQNVKRVSPW 360 LVEVVSNMPS VHLTPFSPPR KKVRLPQHPD FPLLGQFPVL QHSEFPSVGH FPLPPLAKNL 420 LGTNSPFPAG IQGARHGQFG LSSSDLHFNK LQSGLFPVKF QQLSKAPGPD SRMSSSDFPS 480 NKCQENDGRC CSLTMGRNVP EKISNVVKAP MFVLFGQPIL TEEQISQSSS DDTIGNSSSE 540 GNQEKVANVV SDASRFGSNQ NGQMENSSDD GSPWLKDHSM TELKLQTGHC NDASPPLGFS 600 ILSSYGDLHT KLTHMFSNGE GLEVLRTQLA TNPLGTDSSS *

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence Send to blast

MDKCLDPQLW HACAGGMVQM PPVGTNVFYF PQGHSEHASS DVDFRAFAKL PSMFLCRVSA  60
VKYMADPDSD EVFAKIRLLP TNVFDLAADD AAFSGAVDDQ DPPASFAKTL TQSDANNGGG  120
FSVPRYCAET IFPRLDYTAD PPVQTILAKD VHGQTWKFRH IYRGTPRRHL LTTGWSNFVN  180
HKKLVAGDSI VFLRDENGEL CVGVRRATRG IGGCDPQVCW NPAGGNFEST YGGGDDRKRM  240
QVGDGRMRGR VKAESVLEAV SLAASGKPFQ IVYYPRAGTP EFCVRASVVS EAMRVQWCCG  300
MRFKMPFETE DSSRISWFMG TISAAQVADP VRWPNSPWRL LQVAWDEPDL LQNVKRVSPW  360
LVEVVSNMPS VHLTPFSPPR KKVRLPQHPD FPLLGQFPVL QHSEFPSVGH FPLPPLAKNL  420
LGTNSPFPAG IQGARHGQFG LSSSDLHFNK LQSGLFPVKF QQLSKAPGPD SRMSSSDFPS  480
NKCQENDGRC CSLTMGRNVP EKISNVVKAP MFVLFGQPIL TEEQISQSSS DDTIGNSSSE  540
GNQEKVANVV SDASRFGSNQ NGQMENSSDD GSPWLKDHSM TELKLQTGHC NDASPPLGFS  600
ILSSYGDLHT KLTHMFSNGE GLEVLRTQLA TNPLGTDSSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	2e-83	5	364	51	389	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316370.3	0.0	auxin response factor 18
Swissprot	Q653H7	0.0	ARFR_ORYSJ; Auxin response factor 18
TrEMBL	A0A2K1YYK2	0.0	A0A2K1YYK2_POPTR; Auxin response factor
TrEMBL	A0A385JIK6	0.0	A0A385JIK6_POPTO; Auxin response factor
STRING	POPTR_0010s23000.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	auxin response factor 16

Link Out ? help Back to Top
Phytozome	Kaladp0039s0575.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Huang J,Li Z,Zhao D Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice. Sci Rep, 2016. 6: p. 29938 [PMID:27444058]