PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0039s0452.6.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 922aa MW: 101587 Da PI: 5.2681

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0452.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.6e-29	602	652	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Kaladp0039s0452.6.p 602 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 652 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.574	586	672	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-26	605	652	IPR003035	RWP-RK domain
Pfam	PF00564	9.8E-7	844	900	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.6E-11	844	901	No hit	No description
SuperFamily	SSF54277	3.92E-12	844	904	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MEPSRFKDKG VEYFPSLRLS NENVNDGIQS VVMDDVFSGM CEITNFDSYT GWGSTPVPDQ 60 IYAPYEFVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN 120 QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF 180 KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG 240 LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT 300 VKEKPNFDLE MKTVCEALET VSLKTTAPPR LHSQSLSKNQ RDALAEIADV LRTVCHAHRL 360 PLALTWIPCS YTEGLREEFI RLHVEANTER RGKQILCIEE SACFANDKSM EGFVQACCEN 420 YLEGKQGVAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTDVDD 480 YILELFLPVT MTGSYEQQLL LNSLSSTMQK VCKTLRTVSD AELAETGNSK LLRDGICQEF 540 EHTANPGMSS QLSSSTSDTS SFHKLPTDTS KSCIGKREFE DCWQEDVNAQ GRHFEKKRST 600 VEKSVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ 660 TVLDSVQGVE GGLKFDPTTG GLVPARSLVQ DLDKGQILHH GLACNFAAQE MVSTAPSIEL 720 LAIKLEENDC GMGGSHLRAV QNISFKNTGQ GALHKSSFPS ESFSDDAKSS GMDVMANCSL 780 SKQVPRVESL ESHFLSQNSS SMIDEGNNEH NQPASSSMTD SSNGSLLNGS SSTSQSHEDT 840 YIRKKLYEEV ATRFKLQVGT FKLKYLDDED ELVVLESELD WQECLEVIES VSSPSVKFTV 900 LEIPCGMGSS GSSNCFLMRG T*

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MEPSRFKDKG VEYFPSLRLS NENVNDGIQS VVMDDVFSGM CEITNFDSYT GWGSTPVPDQ  60
IYAPYEFVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN  120
QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF  180
KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG  240
LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT  300
VKEKPNFDLE MKTVCEALET VSLKTTAPPR LHSQSLSKNQ RDALAEIADV LRTVCHAHRL  360
PLALTWIPCS YTEGLREEFI RLHVEANTER RGKQILCIEE SACFANDKSM EGFVQACCEN  420
YLEGKQGVAG KALQSNQPFF LPDVKCYDIS EYPLVQHARK FGLSAAVAIR LRSTFTDVDD  480
YILELFLPVT MTGSYEQQLL LNSLSSTMQK VCKTLRTVSD AELAETGNSK LLRDGICQEF  540
EHTANPGMSS QLSSSTSDTS SFHKLPTDTS KSCIGKREFE DCWQEDVNAQ GRHFEKKRST  600
VEKSVSLSVL QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIN KVNRSLRKLQ  660
TVLDSVQGVE GGLKFDPTTG GLVPARSLVQ DLDKGQILHH GLACNFAAQE MVSTAPSIEL  720
LAIKLEENDC GMGGSHLRAV QNISFKNTGQ GALHKSSFPS ESFSDDAKSS GMDVMANCSL  780
SKQVPRVESL ESHFLSQNSS SMIDEGNNEH NQPASSSMTD SSNGSLLNGS SSTSQSHEDT  840
YIRKKLYEEV ATRFKLQVGT FKLKYLDDED ELVVLESELD WQECLEVIES VSSPSVKFTV  900
LEIPCGMGSS GSSNCFLMRG T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017975334.1	0.0	PREDICTED: protein NLP9
Refseq	XP_017975335.1	0.0	PREDICTED: protein NLP9
TrEMBL	A0A061ER47	0.0	A0A061ER47_THECC; Plant regulator RWP-RK family protein, putative isoform 1
STRING	EOY04774	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0452.6.p