PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0413.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family G2-like
Protein Properties Length: 418aa    MW: 44524.1 Da    PI: 6.7692
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0413.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.13.1e-26158211156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k +++WtpeLH+rFv+aveqLG  ekA+P++ile+m+ +gLt+++++SHLQkYR++
  Kaladp0039s0413.1.p 158 KVKVDWTPELHKRFVQAVEQLG--EKAVPSRILEIMGTDGLTRHNIASHLQKYRSH 211
                          5689*****************4..88****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.29155213IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-25156214IPR009057Homeodomain-like
SuperFamilySSF466896.27E-15157214IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-25158211IPR006447Myb domain, plants
PfamPF002493.0E-10161209IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MQMLVASSSS LRDTATKSDD NPETIESGMD EFSDCFSAGS LLDSIDFDEL FAGLDGDPDA  60
LPDLEILGDY SISGGTGDDR GQSSDDGNDA VSGSPFGSGS GLDAGSVCSP GEVVVDKAGD  120
MDVKKDGPEG HFGKVKKSAA SAGKAGRSKA RGSDGNRKVK VDWTPELHKR FVQAVEQLGE  180
KAVPSRILEI MGTDGLTRHN IASHLQKYRS HRKHLIAREA EAASWNQRRH MYGGARGGGM  240
GKRVAVSPWL LPTIGFPPAM SGPMHHHPTV RPLHVWGHPS GDPSQTNTMW PKHILPHQLR  300
PPHLHPRPVW APPHLPYGQS QGMPCYPPPP QRFMAPPVPG IPHHAMYKTD PRAAAAGPAT  360
ILHPPLDSSP SNESIDAALE DVLAKPWLPL PIGLKAPAID TVVGELQRQG VPQIPPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-14163213657Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132777.11e-114hypothetical protein PHAVU_011G124200g
TrEMBLV7AKX51e-113V7AKX5_PHAVU; Uncharacterized protein
STRINGXP_007132777.11e-114(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-59GBF's pro-rich region-interacting factor 1