PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0039s0208.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 357aa MW: 38066.2 Da PI: 9.4662

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0208.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.7e-38	61	118	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rk k + Kaladp0039s0208.3.p 61 APLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKAKPR 118 5789**************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-33	62	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	63	117	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	63	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MLSSTTSSFD WSQPQMSETT SNPTGPRPAP MSSFQVKASI DGRKLVGAAT AADQQAAAAA 60 APLKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKAKPRVR 120 QPSNKLPPVG HRSSHSHNNG PDQTARSGLG QMEEPNLGLN GLPYGKNNST NTEIFNGFGA 180 SRFTNMDLGT RVANSSMGYS QIQNLGLGFS TGEYMRNQSN NSSYLSSYST LFGSNFSSPS 240 GISPSSSLMR SVLEPGDVYE NLKFVNEPPP SVNKGNMGNF LSILPLEDMH IGGNGGGFGS 300 GTKPEELGQT KLSQMGFLSS PSSMDRPSLY NWDNGASNVN SWSDVPSIGS SVTSLL*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MLSSTTSSFD WSQPQMSETT SNPTGPRPAP MSSFQVKASI DGRKLVGAAT AADQQAAAAA  60
APLKCPRCDS SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKAKPRVR  120
QPSNKLPPVG HRSSHSHNNG PDQTARSGLG QMEEPNLGLN GLPYGKNNST NTEIFNGFGA  180
SRFTNMDLGT RVANSSMGYS QIQNLGLGFS TGEYMRNQSN NSSYLSSYST LFGSNFSSPS  240
GISPSSSLMR SVLEPGDVYE NLKFVNEPPP SVNKGNMGNF LSILPLEDMH IGGNGGGFGS  300
GTKPEELGQT KLSQMGFLSS PSSMDRPSLY NWDNGASNVN SWSDVPSIGS SVTSLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-35	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Kaladp0039s0208.3.p