PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0162.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 310aa    MW: 33726.6 Da    PI: 7.2429
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0162.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.2e-163279148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+eEdell ++++q G g W+t +++ g+ R++k+c++rw +yl
  Kaladp0039s0162.1.p 32 RGPWTAEEDELLTKCINQQGEGKWRTLPKRAGLVRCGKSCRLRWMNYL 79
                         89******************************99************97 PP
2Myb_DNA-binding47.15.7e-1590130648
                          HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Kaladp0039s0162.1.p  90 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 130
                          89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2072779IPR017930Myb domain
SuperFamilySSF466899.54E-2929126IPR009057Homeodomain-like
SMARTSM007171.7E-133181IPR001005SANT/Myb domain
PfamPF002497.6E-143279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-213386IPR009057Homeodomain-like
CDDcd001676.35E-113479No hitNo description
PROSITE profilePS5129424.34180134IPR017930Myb domain
SMARTSM007172.7E-1384132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2487135IPR009057Homeodomain-like
PfamPF002499.4E-1490130IPR001005SANT/Myb domain
CDDcd001671.19E-1190130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MRNPSSSASS SPANEKKKSS RNSSGKMVGL KRGPWTAEED ELLTKCINQQ GEGKWRTLPK  60
RAGLVRCGKS CRLRWMNYLH PSVKRGQIAP DEEDLILRLH RLLGNRWSLI AGRIPGRTDN  120
EIKNYWNTHL SKKLISQGID PKTHKPLLET TCTAAAATKN PKLKSVVAAK DGKNSDSDIS  180
GSSKIVTTTT PTSSGQNPNP YRHRHSGSVM DDGLEEDQMV VGHGGYGNNA HEADGAGHHY  240
FHQSDLDLED GVGGGYHVNL QLSPQGLSNE DVHHHGGGDG MINCEGMVEE DDGVLTSFLD  300
SLINDDMFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24301345108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594698.12e-84transcription repressor MYB5-like
TrEMBLA0A411PZP73e-85A0A411PZP7_CITLI; R2R3-MYB family transcription factor
STRINGcassava4.1_011594m7e-84(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-71myb domain protein 5