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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Kaladp0039s0078.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
LBD |
| Protein Properties |
Length: 211aa MW: 23706.8 Da PI: 9.0527 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0039s0078.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 109.8 | 2e-34 | 10 | 104 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
aCaaCk++r++C ++C+lapyfp++++++f++vhk+FG sn++k++++l+ee++++a++sl++eA +r++dPv G +g +++l +l+
Kaladp0039s0078.1.p 10 ACAACKHQRKRCDEKCILAPYFPSDRTREFQAVHKVFGLSNLQKMVRSLSEEDKRRATDSLIWEAFCRQKDPVLGPYGEYRRLFDELKLY 99
7***************************************************************************************99 PP
DUF260 91 kaela 95
k++l+
Kaladp0039s0078.1.p 100 KSQLQ 104
99987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 211 aa
Download sequence Send
to blast |
MERGSATRTA CAACKHQRKR CDEKCILAPY FPSDRTREFQ AVHKVFGLSN LQKMVRSLSE 60
EDKRRATDSL IWEAFCRQKD PVLGPYGEYR RLFDELKLYK SQLQLPIQVS NFGTNNINGA 120
VTDHQFGTPN NNVALLNYVQ KNAGFASNQF TCSPHHKSPK GQGEIGSIIL PLQQRHLVNG 180
YNQQYCVKGQ FSPMNGEATT MESITWEGGS *
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5ly0_A | 6e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
| 5ly0_B | 6e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
