PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0038s0108.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 441aa    MW: 47572 Da    PI: 5.986
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0038s0108.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.53.7e-119714323374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                           lLl+cAe+++ ++l++a+ lL ++sel+sp g++ +R+aayf+ AL+ar+ +s+ ++y+ l+ ++ + ++  +  +a++ ++ +sP++k
  Kaladp0038s0108.1.p  71 GLLLQCAECIAMDNLSEASDLLPEISELSSPFGSSPERVAAYFAHALQARIISSCLGTYSPLNIKTLTASHNHRISNAFQSYNSISPLIK 160
                          58**************************************************************************************** PP

                 GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                          fsh+taNqaI +a+ege+rvH+iD+di+qGlQWp L++ LasRp++  s+RiTgvgs    s++ le+tg+rLa+fA++lg+pfef+++ 
  Kaladp0038s0108.1.p 161 FSHFTANQAIFQALEGEDRVHVIDLDIMQGLQWPGLFHILASRPRKIKSVRITGVGS----SSDLLEATGRRLADFASSLGLPFEFHPFE 246
                          *********************************************************....9**************************99 PP

                 GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl 271
                           k  + ++l++L v+ gEa++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h +++sFl rf+eal+yysalfd+l
  Kaladp0038s0108.1.p 247 GKVGNIVDLSQLGVNCGEAVVVHWMH--HCLYDITGSDFG----TLRLLSLLKPKLITIVEQDLSHgGGGSFLGRFVEALHYYSALFDAL 330
                          999999******************99..777766777777....**********************9999******************** PP

                 GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                            +++ +s er++vE++l+g+ei+n+va  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ eesg+l lg
  Kaladp0038s0108.1.p 331 GDGAGGDSIERHTVEQQLFGWEIRNIVAVGGPKRTGEVK-VERWGDELGRAGFRPVSLGGSPAAQASLLLGMFPWKGYTLVEESGCLKLG 419
                          9999*****************************998887.9************************************************* PP

                 GRAS 362 WkdrpLvsvSaWr 374
                          Wkd +L+++SaW+
  Kaladp0038s0108.1.p 420 WKDLSLLTASAWE 432
                          ************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.14943412IPR005202Transcription factor GRAS
PfamPF035141.3E-11671432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MLQSLVVSHS SIPTKTSLGM KTKRADRELS CAGVEDDSLL ASGKRPNNVC PAEDESAEEQ  60
GGESSGLRLL GLLLQCAECI AMDNLSEASD LLPEISELSS PFGSSPERVA AYFAHALQAR  120
IISSCLGTYS PLNIKTLTAS HNHRISNAFQ SYNSISPLIK FSHFTANQAI FQALEGEDRV  180
HVIDLDIMQG LQWPGLFHIL ASRPRKIKSV RITGVGSSSD LLEATGRRLA DFASSLGLPF  240
EFHPFEGKVG NIVDLSQLGV NCGEAVVVHW MHHCLYDITG SDFGTLRLLS LLKPKLITIV  300
EQDLSHGGGG SFLGRFVEAL HYYSALFDAL GDGAGGDSIE RHTVEQQLFG WEIRNIVAVG  360
GPKRTGEVKV ERWGDELGRA GFRPVSLGGS PAAQASLLLG MFPWKGYTLV EESGCLKLGW  420
KDLSLLTASA WEPCDHRPST *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-162554335380Protein SCARECROW
5b3h_A1e-162554334379Protein SCARECROW
5b3h_D1e-162554334379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022759889.10.0LOW QUALITY PROTEIN: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A061DTB20.0A0A061DTB2_THECC; SCL domain class transcription factor
STRINGEOX931730.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-168GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]