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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0487.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 466aa MW: 51422.6 Da PI: 6.2688 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 286.6 | 6.8e-88 | 51 | 457 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 ++lLl+cA a++ +d +laq++++ l++ asp gdp+qRl++ f++AL +r +r +++ + l++s+t + + l+ ++l ++++ P Kaladp0037s0487.1.p 51 EKLLLHCASALEINDVTLAQQVMWVLNNVASPVGDPNQRLTSWFLRALISRASRVCPTPMGNLNTSSTL---QRRLLSGTELagYVDLIP 137 689***************************************************999888888877776...344444444456****** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpf 176 +++f++ +aN+aI++av+g r+Hi+Df+i++++QWp+L++aLa+RpegppslRi + ++ + ++ +g rL +fA+ ++pf Kaladp0037s0487.1.p 138 WHRFGFCAANSAIYKAVQGYPRIHILDFSITHCMQWPTLIDALAKRPEGPPSLRISVPCTRPHVpplLNVSIDDIGIRLGNFARCRNIPF 227 ********************************************************96664444789999******************** PP GRAS 177 efnvl.........................vak.rledleleeLrvkpgEalaVnlvlqlhrll..........desvsles.....erd 225 ef+v+ + l++l++++L+++ +E+l+Vn++ l +l+ + rd Kaladp0037s0487.1.p 228 EFDVMncsssssgansiemttnnskelltfNIDfLLDCLSPHALNLRDDEVLVVNCQSWLRYLPdgqlknstnhI------HeascsIRD 311 *****9999999999998887777776655333367777899999999999999999999999977666555431......023334689 PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 ++L+l++sl+P+++++v+++ad+ns+s+ r++ +++y + fd+le+ lp+es++ri +E+ +g +i++++ ceg++r+er e+ + Kaladp0037s0487.1.p 312 TFLELLRSLNPHIMIIVDEDADLNSTSLTSRIATCFNYLWIPFDALETFLPKESSQRIEYEAD-IGHKIESIIGCEGFHRIERLESSLNM 400 ***************************************************************.************************** PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++r+++aGF +vp+se+++k++klll +++ g+ ++ ++++l+l+Wk+++ v +S W Kaladp0037s0487.1.p 401 SQRIKTAGFLSVPFSEETVKDVKLLLDEHA-SGWGMKRDDDALILTWKGHNSVYASTW 457 ******************************.899************************ PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.558 | 24 | 439 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-85 | 51 | 457 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MKTEPRGSTA PISLPSHGLL SPSSTSSSSS SNSLPGALKG CLGSLDGACI EKLLLHCASA 60 LEINDVTLAQ QVMWVLNNVA SPVGDPNQRL TSWFLRALIS RASRVCPTPM GNLNTSSTLQ 120 RRLLSGTELA GYVDLIPWHR FGFCAANSAI YKAVQGYPRI HILDFSITHC MQWPTLIDAL 180 AKRPEGPPSL RISVPCTRPH VPPLLNVSID DIGIRLGNFA RCRNIPFEFD VMNCSSSSSG 240 ANSIEMTTNN SKELLTFNID FLLDCLSPHA LNLRDDEVLV VNCQSWLRYL PDGQLKNSTN 300 HIHEASCSIR DTFLELLRSL NPHIMIIVDE DADLNSTSLT SRIATCFNYL WIPFDALETF 360 LPKESSQRIE YEADIGHKIE SIIGCEGFHR IERLESSLNM SQRIKTAGFL SVPFSEETVK 420 DVKLLLDEHA SGWGMKRDDD ALILTWKGHN SVYASTWVPN GSLRD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 2e-55 | 18 | 460 | 1 | 421 | Protein SHORT-ROOT |
5b3h_E | 2e-55 | 18 | 460 | 1 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275420.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
TrEMBL | A0A067DY51 | 0.0 | A0A067DY51_CITSI; Uncharacterized protein | ||||
STRING | VIT_12s0059g02770.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-120 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0487.1.p |