PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 329aa MW: 37056.2 Da PI: 6.5543

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0037s0405.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl Kaladp0037s0405.1.p 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	43.7	6.5e-14	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Kaladp0037s0405.1.p 67 RGNFTSHEEGMIIHLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.696	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	8.8E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.68E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.9E-24	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.5E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.865	66	116	IPR017930	Myb domain
Pfam	PF00249	5.0E-12	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-8	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGRPPCCDKD GVKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TSHEEGMIIH LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLDNRY 120 QQTMEQPHHH YLINSSQQLH HPSNNMGAAS SSTSSSNNGV ITCVHNNDSP SPLLHATTNS 180 SSLTSSSHYA SSTENISRLL EGWMRTSPKT NNKQLIIRSS RSEHESSCED LIVVGMEEDE 240 AVVVPNKDDD TAGHEMTMWG KGRNECFDKE MMMMMMKQQL DEEGGNDSSH GHQRHNNPPF 300 SIFEKWLFEE TSNSGGGQVE EMQLSPIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-23	14	116	27	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895424.1	1e-108	myb-related protein 306
Swissprot	B3VTV7	6e-99	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A1Q3BPR5	1e-103	A0A1Q3BPR5_CEPFO; Myb_DNA-binding domain-containing protein
STRING	evm.model.supercontig_73.13	1e-108	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-86	myb domain protein 60

Link Out ? help Back to Top
Phytozome	Kaladp0037s0405.1.p

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]