PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0347.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 446aa MW: 49836.9 Da PI: 7.8615 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 46 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT +E+++++da k++G W+ I + +g ++t+ q++s+ qk+ Kaladp0037s0347.1.p 46 REKWTDQEHQKFLDALKLYGRA-WRQIEEFIG-TKTAVQIRSHAQKF 90 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.28E-15 | 40 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.496 | 41 | 95 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-16 | 44 | 93 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.4E-11 | 45 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.1E-12 | 46 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-8 | 46 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.34E-8 | 48 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDLLQNQPPP KDTTTPPLLQ FNGSPAPHDH LVTPKLRKPY TITKQREKWT DQEHQKFLDA 60 LKLYGRAWRQ IEEFIGTKTA VQIRSHAQKF FSKVVRGGND TNESPVEAIE IPPPRPKRKP 120 THPYPRKIVD SQNNTITPSF QPEKRICPHI ATIDSENQSP NSVLSAVMSH LLELPVSEVP 180 DSCLSTSSCS TDLQSGSLYS IDKEDNLKAI NSVQYTGIDA MPTIKRSVMS TEDNLANIGN 240 GSSEEEADLA EATVMLFGQI LYKKDSQRSS TDRKGTFRLS EQHLEKTYDN KHGKLVESSA 300 SNGLDGQSPH GMYYGNWRPW SWHEMNSDSK GGNTCQWMSL PLHRGLPSPY LISCVYAPTR 360 SFVEERTYGK EPCASMVKNE STEETKDTAY AVNKVTLLDT PSLNHSYKSG FVPYKRCFTA 420 GGTNSDYDRR GGWPKSSTVP VSHLI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17300.1 | 6e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0347.1.p |