PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0289.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | GRAS | ||||||||
Protein Properties | Length: 454aa MW: 50802.6 Da PI: 6.5101 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 455.1 | 4.3e-139 | 47 | 450 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 l++lLl+cA++v++g+le a+ +L ++s++aspdgd+mqR+a+yft ALa+r+++s+++ly+al++ + ee+ ++klf e++P+ Kaladp0037s0289.1.p 47 LIHLLLTCANHVANGSLESANVALDQISQIASPDGDTMQRIASYFTDALANRILKSWPGLYRALNSARML--MAHEEILVQKLFLELFPF 134 689*************************************************************888886..59999************* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 lk+ + +aNqaI+ea+ege+++H+iD+ +++QW+aLlqaL+ Rpegpp+lRiTg+++ +k l ++++rL+ Ae+l++pf+fn+ Kaladp0037s0289.1.p 135 LKIVYTVANQAIMEAMEGEKMIHVIDLCSAEPAQWVALLQALSVRPEGPPHLRITGIHQ----QKAVLDQMAQRLNAEAERLDIPFQFNP 220 ***********************************************************....9************************** PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrll.....................................desvsleserdevLklvks 233 v+++le+l++++Lrvk+gEala++++lqlh+ll +s +l+s+ d++L +++ Kaladp0037s0289.1.p 221 -VVSNLECLDFDRLRVKTGEALAISSILQLHKLLswddetvrlrlpdkppnynhgtfgellekdagispdsTSSSPLSSKMDSFLMELRN 309 .799*****************************************************************99888889999********** PP GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323 l Pkv+vv+eq+++hn++s++er++eal+yy+alfd+le++++r+s er k+E+ l+g+ei+n++aceg++r+erhe+l kW +rl++aG Kaladp0037s0289.1.p 310 LLPKVMVVAEQDSNHNGSSLMERLTEALYYYAALFDCLESTVSRASLERLKIEKILFGEEIKNIIACEGRDRKERHEKLCKWVRRLGAAG 399 ****************************************************************************************** PP GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 F++vpls a+ a++ll+ ++ dgyr+++e+gs+vl+W+dr+L+svSaWr Kaladp0037s0289.1.p 400 FGAVPLSCLAMLLARRLLQGYGCDGYRIKDENGSIVLCWQDRALFSVSAWR 450 **************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.249 | 21 | 430 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-136 | 47 | 450 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MAPTVQEDGS SSVTSSPLHF FSMMSLSPGS AHPWLKELKS EERGLYLIHL LLTCANHVAN 60 GSLESANVAL DQISQIASPD GDTMQRIASY FTDALANRIL KSWPGLYRAL NSARMLMAHE 120 EILVQKLFLE LFPFLKIVYT VANQAIMEAM EGEKMIHVID LCSAEPAQWV ALLQALSVRP 180 EGPPHLRITG IHQQKAVLDQ MAQRLNAEAE RLDIPFQFNP VVSNLECLDF DRLRVKTGEA 240 LAISSILQLH KLLSWDDETV RLRLPDKPPN YNHGTFGELL EKDAGISPDS TSSSPLSSKM 300 DSFLMELRNL LPKVMVVAEQ DSNHNGSSLM ERLTEALYYY AALFDCLEST VSRASLERLK 360 IEKILFGEEI KNIIACEGRD RKERHEKLCK WVRRLGAAGF GAVPLSCLAM LLARRLLQGY 420 GCDGYRIKDE NGSIVLCWQD RALFSVSAWR CRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-68 | 35 | 452 | 7 | 381 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023924242.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A2N9J6M9 | 0.0 | A0A2N9J6M9_FAGSY; Uncharacterized protein | ||||
STRING | evm.model.supercontig_84.12 | 0.0 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0289.1.p |
Publications ? help Back to Top | |||
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