PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0037s0104.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 101aa MW: 11266.7 Da PI: 9.6587 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.2 | 1.7e-14 | 4 | 62 | 35 | 97 |
EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++l+ +s+++W+v ++ + ++ ++GW eFv+++ L+e f+vF+++g+s+f +v +f Kaladp0037s0104.1.p 4 RIRLKGPSSNKWKVGS--ERAEKDVIVGRGWAEFVSDQSLDESNFLVFHYTGDSSF--KVLIF 62 599*************..***********************************999..66655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.746 | 1 | 65 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.99E-9 | 2 | 62 | No hit | No description |
SuperFamily | SSF101936 | 8.44E-14 | 2 | 70 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.6E-14 | 3 | 67 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-11 | 4 | 61 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MGNRIRLKGP SSNKWKVGSE RAEKDVIVGR GWAEFVSDQS LDESNFLVFH YTGDSSFKVL 60 IFYLSGCEKE SSHFVKPTDR SSSVRALLLT PTDIKNQNPK * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969605.1 | 3e-18 | PREDICTED: B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A061DGN9 | 2e-16 | A0A061DGN9_THECC; Thioredoxin superfamily protein isoform 2 | ||||
STRING | EOX91266 | 5e-17 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-13 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0037s0104.1.p |