PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0036s0319.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 672aa    MW: 73023.2 Da    PI: 7.0427
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0036s0319.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.91.1e-19324423198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+kvl+ sd+++ grlvlpk +ae++   +++ e++ ++++d +g++W++++++  +++s++yvl+ G     ++ +L++gD+v+F++  
  Kaladp0036s0319.1.p 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 410
                          99**************************556667788***************9989999999***9.********************4.. PP

                          S.SEE..EEEEE- CS
                   B3  87 r.sefelvvkvfr 98 
                          r  +++lv++ ++
  Kaladp0036s0319.1.p 411 RdPGGKLVIGSRK 423
                          4499999998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-29319425IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-20321422IPR015300DNA-binding pseudobarrel domain
CDDcd100172.88E-23322419No hitNo description
PfamPF023621.9E-16324423IPR003340B3 DNA binding domain
SMARTSM010192.3E-20324424IPR003340B3 DNA binding domain
PROSITE profilePS5086311.462324425IPR003340B3 DNA binding domain
PROSITE profilePS5105012.983580630IPR011124Zinc finger, CW-type
PfamPF074961.1E-8585627IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MGTAICMNKS CRTPSSPEWK SGWPLRSGGF ATLCLVCGSA FENLVYCETF HRDESGWREC  60
DSCKKPIHCG CASSKPFIEL LDLGGACCIT CAKTTGQPIW RDEVSNGHST QVLSSVGGLQ  120
PTLGEVRIKG DIAGKGKNLL LGKTKMGGDP DCLPEIPKGE ANFSLGAVNG EDVMQSFGDL  180
SSNFLNLNSQ SVGSSHPNVS LGIQDSYEAI PQTSLNIGLS ASSDPSNFSA KNSCGVVEGI  240
ELIKLPSPLQ QSQRSRVILP KLSKGGLSLS IDASKAVVQQ PRVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QLSGDLNSPV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP  360
IRIQDAKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG  420
SRKASVSSDT PDGDIAALAN GAHGESSFSG VSAASGYSGI LQSAAENRDP RMLALSEQMT  480
LAHCNLGWSK SDRYRGRIIG TTLQPSMVNR PKNISLKSRR LLMHNEDVLE LKLTWDEAQD  540
LLRAPPSIKP SIVTVEDHEI EEFDEPPVLA KKTIFTVGPS GGQEQWAQCD LCSKWRRLPV  600
DVLLPLKWNC AENFWDSDRC LCSAPDEVGA KELENLLKSG KGMTETCVIM RLLYVVVIDS  660
LQNRCYYELI K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-693024292129B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017086.20.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
RefseqXP_017983611.10.0PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A061GYW30.0A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRINGEOY347050.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-177high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]