PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 292aa MW: 32482.9 Da PI: 8.7685

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0036s0258.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.2e-07	40	83	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++eE + + +a + + + +W ++a++++ g+t +++ + Kaladp0036s0258.1.p 40 KWSQEENKMFENALAVYDRDspdRWQKVAAMIP-GKTVGDVVKQY 83 8***************99*********.*99998877 PP
2	Myb_DNA-binding	44.8	2.9e-14	149	193	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky Kaladp0036s0258.1.p 149 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 193 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.661	36	91	IPR017884	SANT domain
SMART	SM00717	4.8E-7	37	89	IPR001005	SANT/Myb domain
CDD	cd00167	1.27E-6	40	83	No hit	No description
Pfam	PF00249	3.7E-6	40	85	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.44E-10	40	93	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-12	141	198	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.486	142	198	IPR017930	Myb domain
SuperFamily	SSF46689	7.48E-17	143	197	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-17	145	197	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-13	146	196	IPR001005	SANT/Myb domain
CDD	cd00167	4.05E-11	149	194	No hit	No description
Pfam	PF00249	1.0E-12	149	193	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MKFEMEIRSP GYGYPENNQQ QNSRQNRKQQ HHQQAESLSK WSQEENKMFE NALAVYDRDS 60 PDRWQKVAAM IPGKTVGDVV KQYEDLEADV SSIEAGLVPV PGYACPAFTL DWVGGDGGGG 120 SKSYDGFSYG YGGGKRLRGV EQERKKGVPW TEEEHKLFLL GLKKYGKGDW RNISRNFVIT 180 RTPTQVASHA QKYFIRQLSG GKEKRRASIH DITTVNLSES QTPLSPDQSA RGQHSPEMPF 240 QWGGSQSSSG HGSSIDFNGV YGFSSNRSAQ GMLGSYMDAY QMQSATQYPQ V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-15	41	103	11	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00296	DAP	Transfer from AT2G38090	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362184	1e-42	AK362184.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2003C15.
GenBank	AK363192	1e-42	AK363192.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013G01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278855.1	1e-109	transcription factor DIVARICATA
Swissprot	Q8S9H7	5e-99	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A061GWE3	1e-106	A0A061GWE3_THECC; DIV1A protein
STRING	EOY33801	1e-107	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-78	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Kaladp0036s0258.1.p

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]