PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0033s0284.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 47064.1 Da PI: 4.9246 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.5 | 4.2e-12 | 98 | 141 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR+++++ f +L +l+P++ + K++K+ i+e++v+YI+ L+ Kaladp0033s0284.1.p 98 TERERRKKMRNMFGTLHSLVPNL----QSKPDKVKIVEETVNYIRTLE 141 6*********************9....79****************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.122 | 90 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.4E-14 | 95 | 159 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-13 | 97 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.7E-10 | 98 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.21E-12 | 99 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MEEDGKLQEE INNMFMCDCG SLSLWGCGDG NEKEMIEVAA ELEEGVNNGE ENKNREQDVE 60 LGKIVMAGGG EGDGEGGGGN DGKREDKTED PFDFRIQTER ERRKKMRNMF GTLHSLVPNL 120 QSKPDKVKIV EETVNYIRTL EQTLQTLQTK KQEKLKETRG SISFNPYSPS SSSMMPPQPH 180 PQPQMVVEPY EAISREALLT EYYLNSSSSS RSITPPNSNA PTPKGHNTTA SNSALGSPPI 240 VMIDTPPNNL SGNICGSPPI VMIDTPPSAS SLKHNPNLSG NICGSPPIVM IDTPPNACSL 300 KPNTNLSGNI WASPPIVMKP NPGPGAGETP AKVTLSPSSV AFQTFTSKNV VLCVCGPEAN 360 FNICGARKPG FYTSICSVLE KYRLEVKSLQ VSSEEHSNLT KVMFQARTTA LLDQYPVEDI 420 YRAAAVEMAH LVSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G49770.1 | 1e-11 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0033s0284.1.p |