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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Kaladp0033s0028.2.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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| Family |
MYB |
| Protein Properties |
Length: 277aa MW: 31630.6 Da PI: 8.6435 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Kaladp0033s0028.2.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed ll+++v ++G ++W+ +a+ g++Rt+k+c++rw++yl
Kaladp0033s0028.2.p 35 KGPWTEQEDFLLANVVGLFGDRRWDFVAKVSGLNRTGKSCRLRWLNYL 82
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.4 | 5e-16 | 88 | 133 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T E+ + +++++++G++ W++Iar+++ gRt++++k++w++++
Kaladp0033s0028.2.p 88 RGKMTSTEERIVLELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 133
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MHHSFGFGRQ VISIIGKNKA KTGEEANMMQ QDTRKGPWTE QEDFLLANVV GLFGDRRWDF 60
VAKVSGLNRT GKSCRLRWLN YLHPGLKRGK MTSTEERIVL ELHARWGNRW SRIARRLPGR 120
TDNEIKNYWR THMRKKAQER KRVNYLSITS SESYSSSSNH TQDSLSCSGK ESFYDTGGLA 180
AIAVTGKKQK EEEGERIKMD EIWNDIDISK DTITPLNDSY NQGLCTYSCA PLVSPIWEYC 240
PDPLWRMDED DSKMPPPSND YFQTCCEAGT STLKGP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 2e-27 | 35 | 137 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h88_C | 7e-27 | 35 | 137 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1h89_C | 7e-27 | 35 | 137 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
| 1mse_C | 2e-27 | 35 | 137 | 4 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 2e-27 | 35 | 137 | 4 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Hickman R, et al.
Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
Plant Cell, 2017. 29(9): p. 2086-2105
[PMID:28827376]
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