PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Kaladp0033s0006.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 805aa MW: 88240.6 Da PI: 5.7992

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0033s0006.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.6	2.4e-14	5	63	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++++ ++ps +r++L + +++ +q kvWFqNrR +ek+ Kaladp0033s0006.1.p 5 KYVRYTPEQVEALERVYAEFPKPSSLKRRQLIGGCpvlsSIEPKQMKVWFQNRRCREKQ 63 5678*****************************************************97 PP
2	bZIP_1	24.5	6e-08	57	100	18	61
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 rr+R++ ++e +L+ + k+++aeN++L +e+e+l+k+v+ l Kaladp0033s0006.1.p 57 RRCREKQRKESSRLQAENKKFTAENRMLVEENERLQKQVSHLSY 100 9**************************************98865 PP
3	START	140.7	1.4e-44	150	357	2	204
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 +aee+ +e+++ka+ + +W +++ +++g++++ +++ s+++ g a+ra+g+v +++ v+e+l+d + W ++++ +l v+ ++ g Kaladp0033s0006.1.p 150 IAEETQAEFLSKATGIAVNWIQMVGMKPGPDSVEIVAVSRNCAGVAARACGLVSLEPM-KVAEILKDTPAWFRDCRTHNVLTVLPTAngG 238 689999**************************************************.8899999999************99999 PP EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS START 90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175 +l+l++++++a++++++ Rdf+ +R+i ++g++v++++S++ + ++ s++++Rae++pSg+li+p+++g+s +++v+h dl+ Kaladp0033s0006.1.p 239 TLELIYMQTYAPTTMASaRDFWKLRFISPIEDGGLVVCERSLNASTGGSTgpsSPNFIRAEVFPSGFLIRPCEGGGSIIHIVDHLDLDPC 328 ******************************************999988888********************************* PP XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 176 lphwllrslvksglaegaktwvatlqrqc 204 + +++lr+l++s+ + ++k+ +a+l++ + Kaladp0033s0006.1.p 329 SAPEILRPLYESSEIIAQKISFAALRHIR 357 **********************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	13.961	1	64	IPR001356	Homeobox domain
SMART	SM00389	6.1E-9	2	68	IPR001356	Homeobox domain
CDD	cd00086	2.85E-11	5	65	No hit	No description
SuperFamily	SSF46689	2.31E-13	5	66	IPR009057	Homeodomain-like
Pfam	PF00046	6.9E-12	6	63	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.2E-14	7	60	IPR009057	Homeodomain-like
CDD	cd14686	2.59E-7	57	96	No hit	No description
Gene3D	G3DSA:1.20.5.170	6.2E-4	61	98	No hit	No description
PROSITE profile	PS50848	23.109	140	359	IPR002913	START domain
SMART	SM00234	8.1E-33	149	359	IPR002913	START domain
Pfam	PF01852	1.8E-42	150	357	IPR002913	START domain
SuperFamily	SSF55961	8.38E-27	150	361	No hit	No description
Gene3D	G3DSA:3.30.530.20	6.9E-17	188	325	IPR023393	START-like domain
Pfam	PF08670	1.9E-45	659	803	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 805 aa Download sequence Send to blast
MDSGKYVRYT PEQVEALERV YAEFPKPSSL KRRQLIGGCP VLSSIEPKQM KVWFQNRRCR 60 EKQRKESSRL QAENKKFTAE NRMLVEENER LQKQVSHLSY DNGFMRQKLR SRSATTDASC 120 ESVVTPHSQQ NPTHQPRERD ANSPAGLLAI AEETQAEFLS KATGIAVNWI QMVGMKPGPD 180 SVEIVAVSRN CAGVAARACG LVSLEPMKVA EILKDTPAWF RDCRTHNVLT VLPTANGGTL 240 ELIYMQTYAP TTMASARDFW KLRFISPIED GGLVVCERSL NASTGGSTGP SSPNFIRAEV 300 FPSGFLIRPC EGGGSIIHIV DHLDLDPCSA PEILRPLYES SEIIAQKISF AALRHIRQIA 360 QENCGEIKYG GGKQPAVLRT FSQRLSRGFN DAVNGLVDDG WSLLDSVEMD DVTISINMSA 420 SKFIDSQSNS AALFPAFGGG VLCAKVSMLL EDVAPAHLVR FIREHRSEWA DYGIDAYWAA 480 SVRASPSAIP CSTPSALRSN QVILPLAHTI ELEELCSGIN ENEVGPCAQI VFAPIDESFA 540 DDALLLPSGF RVISLENKAD EPGATRTLDL ASVLEVHTTG ALAAGDSGAN HIKQRAVLTM 600 AFQFTFENHL RDSVASMARQ YVRSVVGAVQ RVAVVLSPAR LGSQMVVENS FPGSTEVITL 660 ARWITQSYKI HTGEELVRVC SQAGDSVLKL LWQFSEAVMC CSLTTNAPPV FTFANQSGLD 720 MLETTFGSLQ DIKLEKTLDE AGRKSLLAEF PKITQQGFAY LPAGNCMSSM GRPISYDQAI 780 AWMVLDDEEV NHCLAFMFVN WSFM*

Sequence ? help Back to Top

Protein Sequence Length: 805 aa Download sequence Send to blast

MDSGKYVRYT PEQVEALERV YAEFPKPSSL KRRQLIGGCP VLSSIEPKQM KVWFQNRRCR  60
EKQRKESSRL QAENKKFTAE NRMLVEENER LQKQVSHLSY DNGFMRQKLR SRSATTDASC  120
ESVVTPHSQQ NPTHQPRERD ANSPAGLLAI AEETQAEFLS KATGIAVNWI QMVGMKPGPD  180
SVEIVAVSRN CAGVAARACG LVSLEPMKVA EILKDTPAWF RDCRTHNVLT VLPTANGGTL  240
ELIYMQTYAP TTMASARDFW KLRFISPIED GGLVVCERSL NASTGGSTGP SSPNFIRAEV  300
FPSGFLIRPC EGGGSIIHIV DHLDLDPCSA PEILRPLYES SEIIAQKISF AALRHIRQIA  360
QENCGEIKYG GGKQPAVLRT FSQRLSRGFN DAVNGLVDDG WSLLDSVEMD DVTISINMSA  420
SKFIDSQSNS AALFPAFGGG VLCAKVSMLL EDVAPAHLVR FIREHRSEWA DYGIDAYWAA  480
SVRASPSAIP CSTPSALRSN QVILPLAHTI ELEELCSGIN ENEVGPCAQI VFAPIDESFA  540
DDALLLPSGF RVISLENKAD EPGATRTLDL ASVLEVHTTG ALAAGDSGAN HIKQRAVLTM  600
AFQFTFENHL RDSVASMARQ YVRSVVGAVQ RVAVVLSPAR LGSQMVVENS FPGSTEVITL  660
ARWITQSYKI HTGEELVRVC SQAGDSVLKL LWQFSEAVMC CSLTTNAPPV FTFANQSGLD  720
MLETTFGSLQ DIKLEKTLDE AGRKSLLAEF PKITQQGFAY LPAGNCMSSM GRPISYDQAI  780
AWMVLDDEEV NHCLAFMFVN WSFM*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281868.2	0.0	PREDICTED: homeobox-leucine zipper protein HOX32
Swissprot	Q6AST1	0.0	HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBL	A0A2N9J8X2	0.0	A0A2N9J8X2_FAGSY; Uncharacterized protein
TrEMBL	A0A438IPB2	0.0	A0A438IPB2_VITVI; Homeobox-leucine zipper protein HOX32
TrEMBL	A5AMZ1	0.0	A5AMZ1_VITVI; Uncharacterized protein
STRING	VIT_10s0003g04670.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34710.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Kaladp0033s0006.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Itoh J,Hibara K,Sato Y,Nagato Y Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice. Plant Physiol., 2008. 147(4): p. 1960-75 [PMID:18567825] Li YY, et al. Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice. Rice (N Y), 2016. 9(1): p. 46 [PMID:27624698]