PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0311.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 466aa    MW: 52097.8 Da    PI: 9.1947
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0311.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-18122171155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta +Aa+a+++a++k++g
  Kaladp0032s0311.1.p 122 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHDAARAYDRAALKFRG 171
                          78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.34E-16122179IPR016177DNA-binding domain
PfamPF008471.9E-9122171IPR001471AP2/ERF domain
CDDcd000182.32E-13123181No hitNo description
SMARTSM003802.3E-32123185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17123179IPR001471AP2/ERF domain
PROSITE profilePS5103217.583123179IPR001471AP2/ERF domain
SMARTSM003807.6E-7215263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MMLDLNLMVA EEEVVHMAAE KFSKSCGTSN SSIANVTEAD EDSCSRAGET PYFNLSVGRE  60
KMNTIELFPM RMAVGDFGDE GLKKKQMDIS FNQNGSSKVK EVQQLQPLVA RKSRRGPRSR  120
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHDAAR AYDRAALKFR GVEADINFNP  180
VDYDEDMKKM VNLTKEQFVH ILRRQSTGFA RGSSKYRGVT LHKCWRWEAR MGQFLGKKAY  240
DSAAIECNGR EAFTNFAPIT YGGGTTFERN SLGTIFISLL KENLGLNKSP SNCVVTEGCD  300
QHLNLNLSIS LPSSGYEPTE KQVSVHPHPK YIYHPYSLLD ARKPNVDEPS SGGHSRLSLY  360
PQLLFNAEVQ APNKRNEQNS HFQSFPNWTW KLNGQASPAP MRLLSSAASS GFSSPALSVP  420
TAAIHLTKPL HHTAHTHYFI QPTATTMGVP PGMFHYQDQI QLPPR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278254.11e-110ethylene-responsive transcription factor RAP2-7 isoform X3
SwissprotQ9SK036e-84RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S3CK841e-108A0A1S3CK84_CUCME; ethylene-responsive transcription factor RAP2-7 isoform X2
STRINGXP_008463879.11e-105(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-76related to AP2.7