PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0267.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family TALE
Protein Properties Length: 409aa    MW: 45301.5 Da    PI: 5.8757
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0267.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.4e-083573902154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  Kaladp0032s0267.1.p 357 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 390
                          469*****************************87 PP
2ELK28.92.6e-10311332122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Kaladp0032s0267.1.p 311 ELKHELKQGYKEKIVDIREEIL 332
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.8E-19143187IPR005540KNOX1
PfamPF037901.2E-16145186IPR005540KNOX1
SMARTSM012567.2E-29199254IPR005541KNOX2
PfamPF037911.0E-20203253IPR005541KNOX2
SMARTSM011886.1E-4311332IPR005539ELK domain
PROSITE profilePS512139.969311331IPR005539ELK domain
PfamPF037899.4E-7311332IPR005539ELK domain
PROSITE profilePS5007111.726331394IPR001356Homeobox domain
SMARTSM003894.7E-11333398IPR001356Homeobox domain
SuperFamilySSF466895.13E-16333396IPR009057Homeodomain-like
CDDcd000865.72E-12334395No hitNo description
Gene3DG3DSA:1.10.10.604.2E-25338395IPR009057Homeodomain-like
PfamPF059201.1E-17351390IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MAYHSQMSQE LPLQHFGDQQ LAETTSSVMQ QMPQASPDAS GKQQASSEQN QTGPNWLNNA  60
ILRHQQNHQY GGDNSSGFLN LHASSNPNGD LMMSAASMSH ESANLGDGSR VGRNGNGEQE  120
LVVESGAIVV AGGVEGVMNW QSARLKAEVL AHPLYEQLLS AHVSCLRIAT PVDQLPRIDA  180
QLSQSQHVVS KYSGLGQGNQ GLMGDDKELD QFMTNYVLLL CSFKEQLQQH VRVHAMEAVM  240
ACWEIEQSLQ SLTGVAPGEG TGATMSDDED DQVDSDANLY DGGLDGLDTM GFGPLIPTES  300
ERSLMERVRQ ELKHELKQGY KEKIVDIREE ILRKRRAGKL PGDTTSVLKA WWQSHSKWPY  360
PTEEDKARLV QETGLQLKQI NNWFINQRKR NWHSNPSTST VLKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387407RKRNWHSNPSTSTVLKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2727880.0EU272788.1 Kalanchoe x houghtonii class 1 knox protein (KN2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285407.20.0PREDICTED: homeobox protein knotted-1-like 3 isoform X2
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLB1P3800.0B1P380_9MAGN; Class 1 knox protein
STRINGVIT_04s0008g06130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-176KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]