PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0121.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 362aa    MW: 40864.2 Da    PI: 7.0498
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0121.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.2e-54111411128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeel+++yL+kkv+g++++l +vi+e+d++k+ePwdL+ k ++ + +++ewyfFs++dkky+tg+r+nrat++g+Wkatg
  Kaladp0032s0121.1.p  11 VPPGFRFHPTDEELLNYYLRKKVSGEEIDL-DVIREIDVNKLEPWDLKdKcRIGSgQQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATG 99 
                          69****************************.9***************843444443666******************************* PP

                  NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +dk+++++ +++  gl+ktLvfy+grap+g+ktdW+mheyrl
  Kaladp0032s0121.1.p 100 RDKAIHHNgSSRRLGLRKTLVFYTGRAPHGQKTDWIMHEYRL 141
                          *******866778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-595169IPR003441NAC domain
PROSITE profilePS5100559.26111169IPR003441NAC domain
PfamPF023654.0E-2812141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMSGSSGQLS VPPGFRFHPT DEELLNYYLR KKVSGEEIDL DVIREIDVNK LEPWDLKDKC  60
RIGSGQQNEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHHNGSS RRLGLRKTLV  120
FYTGRAPHGQ KTDWIMHEYR LDDHHNITHT TTLDHQEDDG WVVCRVFKKK NNPRSDYEQD  180
LKNPNTSKND EDESLNQRAA WPPSSYNNTN NGSSTPMILM QPPHMNYYSA INTSMHLPQL  240
FSPEANVATF MSPIITSNDN NNADVECSHS LLRLMSSSSS PAAASGLLSL NNNTGSSSSD  300
WSFLDKLLAT NNISQQVQLL DHHHHYNAPP SFQLVDYVGA SAHKTHLDCF GCESDSLKYS  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-54817217171NAC domain-containing protein 19
3swm_B2e-54817217171NAC domain-containing protein 19
3swm_C2e-54817217171NAC domain-containing protein 19
3swm_D2e-54817217171NAC domain-containing protein 19
3swp_A2e-54817217171NAC domain-containing protein 19
3swp_B2e-54817217171NAC domain-containing protein 19
3swp_C2e-54817217171NAC domain-containing protein 19
3swp_D2e-54817217171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316163.21e-128protein SOMBRERO
RefseqXP_011014561.11e-128PREDICTED: protein SOMBRERO-like
RefseqXP_011014569.11e-128PREDICTED: protein SOMBRERO-like
RefseqXP_024466050.11e-128protein SOMBRERO
SwissprotQ9MA171e-105SMB_ARATH; Protein SOMBRERO
TrEMBLA0A3N7HAQ91e-126A0A3N7HAQ9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18420.11e-127(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.32e-87NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]