PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0032s0059.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 356aa    MW: 39302.6 Da    PI: 9.0301
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0032s0059.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.71e-11137181347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++ ++ + k+lG g+W+ I++ +  +R + q+ s+ qky
  Kaladp0032s0059.1.p 137 PWTEEEHQTFLIGLKKLGRGDWRGISKNFVHTRNPTQVASHAQKY 181
                          8*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.697623IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.353130186IPR017930Myb domain
SuperFamilySSF466894.19E-16131185IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-15133185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10134181IPR009057Homeodomain-like
SMARTSM007179.1E-9134184IPR001005SANT/Myb domain
PfamPF002498.0E-10137181IPR001005SANT/Myb domain
CDDcd001671.05E-7137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTGGARRCSH CGNNGHNSRT CNEGKGCLKL FGVKILAEDK VDNHIHDESV VKTYRKEAIK  60
RSNSVGHLAY HHYNNQLALM PIKNCDVAHI GDGDIVNLEH EPENDPHHGD DGYLSDGLTQ  120
YSYCKPKVVR RRKKGVPWTE EEHQTFLIGL KKLGRGDWRG ISKNFVHTRN PTQVASHAQK  180
YFMRQMSAKD STKKKKRRLS LFDLPLKEDL CSIPSASPLL KDSSPLQHGE TCFLNGSNDS  240
LDQGELPFPA HQYSQLLPPL SPGPGPGPAL TGRPYNQGWK RSHIPRLENH ADDQANVMTK  300
LNVLALVSPR QVNATTLQLG LPSFASSNKA GGLMSSMVDD MLELRIALPV GTPSE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132KVVRRRK
2192197KKKKRR
3193197KKKRR
4193198KKKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278155.23e-53PREDICTED: transcription factor MYB1R1 isoform X1
STRINGXP_008453854.11e-48(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.12e-39MYB_related family protein