PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0166.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 84aa    MW: 9369.9 Da    PI: 8.0469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0166.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3598.6e-194781795
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                   B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                          +p +f++e++++  ++ +++l++e+g sW+v++    + g+y l +GW+ Fv++ng+k gD++ Fkl++r   e++v 
  Kaladp0031s0166.1.p  4 NIPMHFVRENSLSYCTDEKMVLRTETGSSWSVNV--VANMGGYKLCGGWSAFVSDNGIKKGDVCEFKLMSR--LEMRVE 78
                         59********888888889***************..99999**************************9874..444555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.1E-6183IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.0E-19379IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-18479IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-17577IPR003340B3 DNA binding domain
CDDcd100171.79E-14579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MMQNIPMHFV RENSLSYCTD EKMVLRTETG SSWSVNVVAN MGGYKLCGGW SAFVSDNGIK  60
KGDVCEFKLM SRLEMRVEVT PKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-10B3 family protein