PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0031s0049.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 454aa    MW: 50188.8 Da    PI: 7.0386
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0031s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.6e-173077148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +l+d+v+++G g+W+++ r  g+ R++k+c++rw ++l
  Kaladp0031s0049.1.p 30 KGPWTSAEDAILIDYVRKHGEGNWNAVQRNSGLQRCGKSCRLRWANHL 77
                         79******************************************9986 PP
2Myb_DNA-binding50.25.8e-1683126146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T++E+ l++++++++G++ W++ a+ m+ gRt++++k++w++
  Kaladp0031s0049.1.p  83 KGAFTPDEERLILELHAKFGNK-WARMAAQMQ-GRTDNEIKNYWNT 126
                          799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2462577IPR017930Myb domain
SuperFamilySSF466895.24E-3028124IPR009057Homeodomain-like
SMARTSM007179.5E-142979IPR001005SANT/Myb domain
PfamPF002499.4E-153077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-233184IPR009057Homeodomain-like
CDDcd001673.01E-113277No hitNo description
PROSITE profilePS5129424.90778132IPR017930Myb domain
SMARTSM007171.9E-1582130IPR001005SANT/Myb domain
PfamPF002494.8E-1583126IPR001005SANT/Myb domain
CDDcd001672.52E-1185126No hitNo description
Gene3DG3DSA:1.10.10.606.1E-2585130IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MMASSSSHGE TTTTRSSGGG AAEEVVALKK GPWTSAEDAI LIDYVRKHGE GNWNAVQRNS  60
GLQRCGKSCR LRWANHLRPD LKKGAFTPDE ERLILELHAK FGNKWARMAA QMQGRTDNEI  120
KNYWNTRMKR HQRAGLAIYP THIQSGHRQH RLQRHRKQQQ HAMKSTTSHT QMLDFQNQTA  180
INFNNPSSQS QPFLFTTHQV PIPSHHHQFN FFTEQKNAND QQSCDQTSLS SAAASHSLFL  240
ANPLHQALEL KNNEPDSSAG IIGSSDFGLV HLSGSHMSSM QSVGCDDHRL SKANVSSGML  300
DDVYLNAVEL GNEKDDSSNQ RLLLMPASKK MKDCGVTTPE NSNSGLTSIG MRVEEPAVVE  360
MNPLDDDELT SLLYSFPSAS PTPQWYRRGT TNNDNDSSGD AYGGVVLDLI HRPAMTLPDH  420
LMPPDPAANG QDLSLEGSPT STLMLWHNLP TIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28281305106B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.14e-69myb domain protein 101