PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 201aa MW: 22895.7 Da PI: 7.5658

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0031s0028.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	7e-19	28	82	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t +qle Le+ F ++ +++ +++ +LA+ lgL+ rq+ vWFqNrRa++k+ Kaladp0031s0028.1.p 28 KKKRLTCDQLESLEKSFLEEIKLDPDRKIRLARDLGLQPRQIAVWFQNRRARWKN 82 5567999**********************************************95 PP
2	HD-ZIP_I/II	116.7	1.3e-37	28	118	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl+ +q+++LE+sF ee kL+p+rK +lar+Lglqprq+avWFqnrRAR+k+kq+E+ y+aLk++y+ +++e+++L++ev +L++ l Kaladp0031s0028.1.p 28 KKKRLTCDQLESLEKSFLEEIKLDPDRKIRLARDLGLQPRQIAVWFQNRRARWKNKQIERLYDALKQEYEVVAREKQKLQDEVVKLQAML 117 9**************9999****************************************************************988 PP HD-ZIP_I/II 92 k 92 + Kaladp0031s0028.1.p 118 R 118 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-19	18	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	23	83	IPR001356	Homeobox domain
SMART	SM00389	2.0E-16	25	87	IPR001356	Homeobox domain
Pfam	PF00046	2.8E-16	28	82	IPR001356	Homeobox domain
CDD	cd00086	6.38E-15	28	84	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.6E-20	30	90	IPR009057	Homeodomain-like
PRINTS	PR00031	2.6E-5	54	63	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	58	81	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.6E-5	63	79	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.0E-7	83	117	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MEKNNQKLSN SNSETNDHNY CGNNMQDKKK RLTCDQLESL EKSFLEEIKL DPDRKIRLAR 60 DLGLQPRQIA VWFQNRRARW KNKQIERLYD ALKQEYEVVA REKQKLQDEV VKLQAMLREH 120 GVRNQVSATG YTEVSGEDTI ESAAVVVGNS RPQPAAPLLT GPHQIEETNY PQAADQGYTP 180 LPVQPGYWQG GGIHQLPPYP *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARWKNKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202889.2	2e-65	putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_023885965.1	2e-65	putative homeobox-leucine zipper protein ATHB-51
Refseq	XP_024186526.1	2e-65	putative homeobox-leucine zipper protein ATHB-51 isoform X2
Swissprot	Q9LZR0	4e-52	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1R3IN46	1e-65	A0A1R3IN46_9ROSI; Uncharacterized protein
TrEMBL	A0A1R3KHF9	3e-65	A0A1R3KHF9_COCAP; Uncharacterized protein
STRING	EMJ04088	9e-65	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-54	homeobox 51

Link Out ? help Back to Top
Phytozome	Kaladp0031s0028.1.p

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]