PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0029s0106.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 358aa    MW: 40304.3 Da    PI: 5.8877
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0029s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.15.4e-47121362128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          p+GfrFhP+deel+v+yL++kv++++l++ ++i+e+d+yk++Pw+L++k+  +++e yfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Kaladp0029s0106.1.p  12 PAGFRFHPSDEELIVHYLQPKVASRPLPA-SIIAEIDLYKYHPWELHQKALFGDDEFYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKA 100
                          89***************************.89**************98777899************************************ PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +++++g+kk Lvfy gr p   kt+W+m+eyrl
  Kaladp0029s0106.1.p 101 IVTSsGSKTIGVKKALVFYVGRPPA--KTEWMMDEYRL 136
                          *99868889*************999..*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-579163IPR003441NAC domain
PROSITE profilePS5100554.88511163IPR003441NAC domain
PfamPF023653.4E-2512136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERGPGTNFN FPAGFRFHPS DEELIVHYLQ PKVASRPLPA SIIAEIDLYK YHPWELHQKA  60
LFGDDEFYFF SPRDRKYPNG LRPNRAAASG YWKATGTDKA IVTSSGSKTI GVKKALVFYV  120
GRPPAKTEWM MDEYRLPETT KRPSRSKSTM RLDDWVLCRV RQKANTTKNL HRAPDPPKPE  180
SMRYLMQVED SLPAVTNNDN EMFKDDMYKH CPVLTSLLTG KPLRPIDTNQ WASPQEIYSS  240
CGSVYEDGSC SDASPMTVSS FGSSLDPLNG KQMQENSTGI PLPSKYLTNE NENSFFGEAQ  300
KMPSDDVMDL CSYLYYEADV FTPSPSSVDM TTDSVFADGY ICHFSSPSSK DHYLSEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-61216911174NAC domain-containing protein 19
3swm_B2e-61216911174NAC domain-containing protein 19
3swm_C2e-61216911174NAC domain-containing protein 19
3swm_D2e-61216911174NAC domain-containing protein 19
3swp_A2e-61216911174NAC domain-containing protein 19
3swp_B2e-61216911174NAC domain-containing protein 19
3swp_C2e-61216911174NAC domain-containing protein 19
3swp_D2e-61216911174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.21e-115PREDICTED: NAC domain-containing protein 72-like
SwissprotK4BNG73e-70NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A438DTI41e-113A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ41e-113F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t011e-114(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-70NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]