PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Kaladp0028s0024.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 293aa MW: 33064.9 Da PI: 9.3856

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0028s0024.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.6	1.9e-17	20	107	1	95
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv ++s+ l +p f++ + + + l+d +gr W+v l ++ ++++++++GW++Fv++ L eg+f++F++d+ ++ Kaladp0028s0024.1.p 20 FFKVY--LARFSSHHLKIPPAFVKYCVRN--LPERALLKDVNGRAWDVGL--DRADDGMFIRDGWEKFVDDAALSEGEFLIFTYDQ-DDL 102 66776..77889999******666433..455699*********..******************************98.555 PP ..EEE CS B3 91 elvvk 95 ++vvk Kaladp0028s0024.1.p 103 TFVVK 107 55665 PP
2	B3	35.6	1.7e-11	194	282	18	97
--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 18 lpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 l+k+ a+++ +++ + t++l+ +W+ k+ ++ k+gr +l++GW +F ++n+Lk+gD + F+++ + +++ Kaladp0028s0024.1.p 194 LSKTMAKSNklklnldgkllkkhNIQ--MHPTVKLYIGGLSKWTTKF-VTSKDGRLYLGSGWTHFYHENDLKAGDECDFEFVLD--NRMR 278 55555555544333333332211444..333777777777*****.6888899***********************7632..2334 PP EEEE CS B3 94 vkvf 97 +++ Kaladp0028s0024.1.p 279 ARIC 282 4554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.89E-21	17	114	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-19	17	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.96E-16	18	107	No hit	No description
PROSITE profile	PS50863	12.76	18	112	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-15	20	107	IPR003340	B3 DNA binding domain
SMART	SM01019	1.7E-14	20	111	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-12	191	275	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.3E-13	193	282	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.92E-8	193	283	No hit	No description
SMART	SM01019	0.012	194	285	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.9E-9	205	282	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.798	233	285	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTRQRTRPSH SAAGDVPPEF FKVYLARFSS HHLKIPPAFV KYCVRNLPER ALLKDVNGRA 60 WDVGLDRADD GMFIRDGWEK FVDDAALSEG EFLIFTYDQD DLTFVVKRYG IHGCRKDVCL 120 ASNKEIVCVN LKDVEEDAGD HELAPCTDGS GGSIRNLRPL KSRLRISGNK AVAAKGDLAW 180 SEASGRIVSN CLHLSKTMAK SNKLKLNLDG KLLKKHNIQM HPTVKLYIGG LSKWTTKFVT 240 SKDGRLYLGS GWTHFYHEND LKAGDECDFE FVLDNRMRAR ICKQIRVQIR HI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	5e-21	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0028s0024.1.p