PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0028s0023.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 296aa    MW: 34282.7 Da    PI: 10.2584
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0028s0023.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64e-17361181199
                          HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          l+++ l++pkkfa +   k   + t++l+ ++g  W+vk+    + + ++l++GW +F  ++ L+e Df+vF+++g+s+f   v++f++
  Kaladp0028s0023.2.p  36 LSRSELRVPKKFAMKLPVK--LGETIKLRGPTGDIWSVKV--VETEEDVLLREGWPRFLYDHLLNEYDFLVFHYTGSSSF--DVSIFDR 118
                          67788********777544..7789***************..99999*****************************9999..9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-2223121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-2025121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3826119IPR003340B3 DNA binding domain
SMARTSM010193.1E-1131119IPR003340B3 DNA binding domain
PfamPF023623.1E-1436119IPR003340B3 DNA binding domain
CDDcd100178.16E-1636117No hitNo description
Gene3DG3DSA:2.40.330.104.3E-7135196IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-7136196IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MAEMDEREEI SRAMEEQIYW NQFESTKHHF FETVELSRSE LRVPKKFAMK LPVKLGETIK  60
LRGPTGDIWS VKVVETEEDV LLREGWPRFL YDHLLNEYDF LVFHYTGSSS FDVSIFDRNG  120
CMKDLRMLQD QFEIKPHFFK VMNKEFRSKL LIPKKLSVRF VEKMGNIIRL KGPSGNVWKV  180
GAKTAGGDAI LGRGCEKESS HFVKPAARSA DLRGERARKM GKLPAGFTGG GDHEREETPI  240
SKMQCKVNPK MKGKMRIQEK NDTPAHKTMK LPKELTLEQL QDLKIKHNQR KQQRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-15B3 family protein