PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0028s0023.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | B3 | ||||||||
Protein Properties | Length: 331aa MW: 38291.1 Da PI: 9.8767 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 4.9e-17 | 36 | 118 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 l+++ l++pkkfa + k + t++l+ ++g W+vk+ + + ++l++GW +F ++ L+e Df+vF+++g+s+f v++f++ Kaladp0028s0023.1.p 36 LSRSELRVPKKFAMKLPVK--LGETIKLRGPTGDIWSVKV--VETEEDVLLREGWPRFLYDHLLNEYDFLVFHYTGSSSF--DVSIFDR 118 67788********777544..7789***************..99999*****************************9999..9999998 PP | |||||||
2 | B3 | 54.4 | 2.3e-17 | 138 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffkv+ + ++s+ l +pkk ++ +k + ++l+ +sg++W+v + +g +l++GW eFv+++ L+e f+vF+++g+s+f Kaladp0028s0023.1.p 138 FFKVM--NKEFRSK-LLIPKKLSVRFVEK--MGNIIRLKGPSGNVWKVGA--KTAGGDAILGRGWAEFVSDHSLDESNFLVFHHTGDSSF 220 78888..7777776.99999987777433..4558***************..999999****************************9999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 v +f+ Kaladp0028s0023.1.p 221 --SVLIFDP 227 ..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-21 | 23 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-20 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.38 | 26 | 119 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-11 | 31 | 119 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-14 | 36 | 118 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.95E-15 | 36 | 117 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.9E-22 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-23 | 135 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.352 | 135 | 228 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.65E-16 | 136 | 226 | No hit | No description |
Pfam | PF02362 | 1.2E-14 | 138 | 226 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-11 | 138 | 228 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAEMDEREEI SRAMEEQIYW NQFESTKHHF FETVELSRSE LRVPKKFAMK LPVKLGETIK 60 LRGPTGDIWS VKVVETEEDV LLREGWPRFL YDHLLNEYDF LVFHYTGSSS FDVSIFDRNG 120 CMKDLRMLQD QFEIKPHFFK VMNKEFRSKL LIPKKLSVRF VEKMGNIIRL KGPSGNVWKV 180 GAKTAGGDAI LGRGWAEFVS DHSLDESNFL VFHHTGDSSF SVLIFDPSRC EKESSHFVKP 240 AARSADLRGE RARKMGKLPA GFTGGGDHER EETPISKMQC KVNPKMKGKM RIQEKNDTPA 300 HKTMKLPKEL TLEQLQDLKI KHNQRKQQRR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-18 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0028s0023.1.p |