PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0024s0937.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9482.49 Da PI: 8.9336 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 14 | 57 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ + +W +ar +g g++++++k ++ Kaladp0024s0937.1.p 14 SWTAKQNKLFEKALALYDRDtpdRWQNVARAVG-GKSAEEVKRHY 57 7*****************99*************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.092 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 6.3E-8 | 11 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 14 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-5 | 14 | 67 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.14E-12 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-6 | 15 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MTSDNISSLG SSSSWTAKQN KLFEKALALY DRDTPDRWQN VARAVGGKSA EEVKRHYEIL 60 IEDLRHIEAG QVPYPNYRST GNGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-36 | 7 | 81 | 3 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028767941.1 | 2e-41 | protein RADIALIS-like 3 | ||||
Swissprot | Q58FS3 | 5e-36 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | B9MXN3 | 1e-39 | B9MXN3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s12390.1 | 2e-40 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-36 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0024s0937.1.p |
Publications ? help Back to Top | |||
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