PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0857.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 903aa MW: 99989.9 Da PI: 4.4972

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0857.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	753	795	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + el++++++q+G++ ++ I + ++ gRt+ q+k+++ k Kaladp0024s0857.2.p 753 ASWSKLDTELFYQGIRQFGTD-FTVIQQLFP-GRTRHQIKLKYKK 795 58*****************.*****.*********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF15963	9.5E-28	745	829	No hit	No description
SuperFamily	SSF46689	8.22E-10	746	797	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-5	750	795	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.462	750	798	IPR017884	SANT domain
SMART	SM00717	1.2E-8	751	799	IPR001005	SANT/Myb domain
CDD	cd00167	6.41E-7	754	795	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS 60 LPQESSSDAT HMGVASAAKS VGLSDSLNNV EEQHSGISLV QQVPVSPEPV SPLPRHDDGC 120 SKDAFHEEQA ETRVDGSQTS LVEVCPSKGL GQVAKDYITS MDSEFDSFDD FLAAPTDSNG 180 AATKFKPKAK GRPKPRSSVV LSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN 240 SICVSDHLNK AESASLKCNQ FDDIDPEQSI STARDGGEFR PKLKSRPVKQ TLSSAKSGLT 300 GTMNENHVEI SSDAFDSNRQ ENLGGTDVSG NNNIPEGSLQ DRVPLDDSRR FEMENSSSIN 360 VVLDDLQFDV TTIESFHPQS RSSPDKSLNS SRDVFMGDRI IESYQFDNGE IPCSIIMVDQ 420 GNPHSFVDQE SNTCDSSQAQ SMFGVTGNQN EMSIRDSTTS MITKPSDIDS GRMEPEHRES 480 FDNGSLDDPS ISGFPLADDY FSINEPFTCG SEIGQSGASL PDNGMHVEAT HEIPVERVDD 540 SAAPEGTGTR QPSRVLRKRK ARSTRPAESV DCETDSIHGE LHSEFDRNQD EDYNEGNTNQ 600 KKKGVQRSRK SVPESDQPNR SRKKVKDASS EQQEKPKKKF SHSTRGRRKR VDPTLLATPD 660 DEIDHRSCSF RDLILRAEFL ERDSKKVSTP SSVPATNQRT ESPSPWDQPY NERSNFDSDQ 720 HGEYDYYEDD NIEVQESSSY FNYHSYMTKT PRASWSKLDT ELFYQGIRQF GTDFTVIQQL 780 FPGRTRHQIK LKYKKEERQH PQRVSEAIEN RAKGISYFQQ VIEQLKATDT QADQELGEDP 840 NEVEDYADDV LEENAEPNEN GSTRLELGDV VAKDDVEALD TAEVSEKMDE DDDYGLGSYV 900 GL*

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MDFDDLDPFD DFLEVRTDAN GEAAKKFKPK SKPRPKPRSA AHTSVASQPQ KEKLLVSVPS  60
LPQESSSDAT HMGVASAAKS VGLSDSLNNV EEQHSGISLV QQVPVSPEPV SPLPRHDDGC  120
SKDAFHEEQA ETRVDGSQTS LVEVCPSKGL GQVAKDYITS MDSEFDSFDD FLAAPTDSNG  180
AATKFKPKAK GRPKPRSSVV LSTSPHVSIE NALISTAAAV ETVQENAAEV AYLSPPRASN  240
SICVSDHLNK AESASLKCNQ FDDIDPEQSI STARDGGEFR PKLKSRPVKQ TLSSAKSGLT  300
GTMNENHVEI SSDAFDSNRQ ENLGGTDVSG NNNIPEGSLQ DRVPLDDSRR FEMENSSSIN  360
VVLDDLQFDV TTIESFHPQS RSSPDKSLNS SRDVFMGDRI IESYQFDNGE IPCSIIMVDQ  420
GNPHSFVDQE SNTCDSSQAQ SMFGVTGNQN EMSIRDSTTS MITKPSDIDS GRMEPEHRES  480
FDNGSLDDPS ISGFPLADDY FSINEPFTCG SEIGQSGASL PDNGMHVEAT HEIPVERVDD  540
SAAPEGTGTR QPSRVLRKRK ARSTRPAESV DCETDSIHGE LHSEFDRNQD EDYNEGNTNQ  600
KKKGVQRSRK SVPESDQPNR SRKKVKDASS EQQEKPKKKF SHSTRGRRKR VDPTLLATPD  660
DEIDHRSCSF RDLILRAEFL ERDSKKVSTP SSVPATNQRT ESPSPWDQPY NERSNFDSDQ  720
HGEYDYYEDD NIEVQESSSY FNYHSYMTKT PRASWSKLDT ELFYQGIRQF GTDFTVIQQL  780
FPGRTRHQIK LKYKKEERQH PQRVSEAIEN RAKGISYFQQ VIEQLKATDT QADQELGEDP  840
NEVEDYADDV LEENAEPNEN GSTRLELGDV VAKDDVEALD TAEVSEKMDE DDDYGLGSYV  900
GL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	5e-38	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Kaladp0024s0857.2.p